Functional clusters
Information
- Type MapMan
- Description RNA biosynthesis.transcriptional regulation.NF-Y transcription factor complex.component NF-YC
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Arabidopsis lyrata | scaffold_8 | 1 | CH_aly_73 | 4 | 6 | 0.00000000426874 |
| Arabidopsis thaliana | Chr5 | 1 | CH_ath_173 | 3 | 5 | 0.00000147715 |
| Capsicum annuum | PGAv.1.6.scaffold65 | 1 | CH_can_141 | 4 | 13 | 0.000000253437 |
| Corylus avellana | 4 | 1 | CH_cav_79 | 4 | 8 | 0.0000000198596 |
| Daucus carota | DCARv2_Chr2 | 1 | CH_dca_432 | 2 | 2 | 0.000637775 |
| Glycine max | Gm13 | 1 | CH_gma_204 | 3 | 3 | 0.000000786602 |
| Lonicera japonica | GWHAAZE00000081 | 1 | CH_lonja_300 | 3 | 7 | 0.0000105386 |
| Magnolia biondii | Chr17 | 1 | CH_mbi_29 | 7 | 28 | 4.02987e-16 |
| Phaseolus vulgaris | Chr06 | 1 | CH_pvu_181 | 3 | 3 | 0.000000971718 |
| Solanum lycopersicum | SL4.0ch03 | 1 | CH_sly_109 | 6 | 63 | 0.000000000974194 |
| Solanum pennellii | Spenn-ch03 | 1 | CH_spe_23 | 9 | 60 | 3.64444e-18 |
| Solanum tuberosum | ST4.03ch03 | 1 | CH_stu_168 | 3 | 3 | 0.0000000787843 |
| Trifolium pratense | Tp57577_TGAC_v2_LG6 | 1 | CH_tpr_55 | 4 | 8 | 0.00000000637283 |
| Arabidopsis lyrata | scaffold_8 | 2 | CH_aly_73 | 4 | 6 | 0.00000000426874 |
| Arabidopsis thaliana | Chr5 | 2 | CH_ath_173 | 3 | 5 | 0.00000147715 |
| Capsicum annuum | PGAv.1.6.scaffold65 | 2 | CH_can_141 | 4 | 13 | 0.000000253437 |
| Corylus avellana | 4 | 2 | CH_cav_79 | 4 | 8 | 0.0000000198596 |
| Daucus carota | DCARv2_Chr2 | 2 | CH_dca_432 | 2 | 2 | 0.000637775 |
| Glycine max | Gm13 | 2 | CH_gma_204 | 3 | 3 | 0.000000786602 |
| Lotus japonicus | chr6 | 2 | CH_lja_248 | 3 | 11 | 0.0000707774 |
| Lonicera japonica | GWHAAZE00000081 | 2 | CH_lonja_300 | 3 | 7 | 0.0000105386 |
| Magnolia biondii | Chr17 | 2 | CH_mbi_29 | 7 | 28 | 4.02987e-16 |
| Phaseolus vulgaris | Chr06 | 2 | CH_pvu_181 | 3 | 3 | 0.000000971718 |
| Solanum lycopersicum | SL4.0ch03 | 2 | CH_sly_109 | 6 | 63 | 0.000000000974194 |
| Solanum pennellii | Spenn-ch03 | 2 | CH_spe_23 | 9 | 60 | 3.64444e-18 |
| Solanum tuberosum | ST4.03ch03 | 2 | CH_stu_168 | 3 | 3 | 0.0000000787843 |
| Trifolium pratense | Tp57577_TGAC_v2_LG6 | 2 | CH_tpr_55 | 4 | 8 | 0.00000000637283 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |