Functional clusters

Information

  • Type MapMan
  • Description RNA biosynthesis.transcriptional regulation.WRKY transcription factor activity.transcription factor (WRKY)

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Aethionema arabicum LG-4 1 CH_aar_15 9 12 1.10744e-16
Aethionema arabicum LG-2 1 CH_aar_96 4 4 0.00000221377
Amaranthus hybridus AmaHy_arrow1_Scaffold_6 1 CH_amhyb_76 4 6 0.00000363374
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.07 1 CH_arhy_388 4 5 0.0000144782
Brassica carinata ChrC01 1 CH_bca_442 4 4 0.00000579737
Brassica oleracea C3 1 CH_bol_423 3 3 0.000748704
Capsicum annuum PGAv.1.6.scaffold792 1 CH_can_153 4 4 0.000000358395
Corylus avellana 6 1 CH_cav_171 5 16 0.00000351802
Ceratophyllum demersum 7 1 CH_cde_16 6 10 0.00000000894028
Davidia involucrata GWHABJS00000003 1 CH_din_482 3 3 0.000519329
Durio zibethinus NW_019167827.1 1 CH_dzi_73 7 23 0.0000000228537
Erigeron canadensis Conyza_canadensis_scaffold:7 1 CH_eca_232 4 8 0.0000153807
Fragaria x ananassa Fvb6-1 1 CH_fan_453 4 8 0.000227216
Fragaria vesca Fvb6 1 CH_fve_94 6 14 0.00000000355251
Glycine max Gm13 1 CH_gma_259 4 4 0.00000633741
Helianthus annuus HanXRQChr14 1 CH_han_389 4 6 0.000018529
Lactuca sativa Lsat_1_v8_lg_9 1 CH_lsa_212 4 4 0.00000049522
Lactuca sativa Lsat_1_v8_lg_2 1 CH_lsa_430 3 3 0.000267611
Magnolia biondii Chr14 1 CH_mbi_257 5 24 0.00000664061
Magnolia biondii Chr15 1 CH_mbi_379 3 3 0.0000980757
Magnolia biondii Chr15 1 CH_mbi_483 4 16 0.000226902
Malus domestica Chr12 1 CH_mdo_409 4 8 0.0000759046
Medicago truncatula chr2 1 CH_mtr_335 5 10 0.000000491119
Olea europaea chr11 1 CH_oeu_392 3 3 0.000755874
Olea europaea chr19 1 CH_oeu_97 4 4 0.00000201749
Olea europaea chr8 1 CH_oeu_98 4 4 0.00000201749
Oryza sativa ssp. japonica chr11 1 CH_osa_174 4 6 0.0000133758
Oryza sativa ssp. japonica chr01 1 CH_osa_175 4 6 0.0000133758
Oryza sativa ssp. japonica chr05 1 CH_osa_338 3 3 0.000413235
Oryza sativa ssp. japonica chr12 1 CH_osa_73 5 6 0.000000011464
Prunus persica Pp06 1 CH_ppe_429 3 3 0.000257562
Pisum sativum chr5LG3 1 CH_psa_348 3 3 0.000348246
Pisum sativum chr6LG2 1 CH_psa_349 3 3 0.000348246
Papaver somniferum NW_020631041.1 1 CH_pso_8 13 22 4.9053e-28
Papaver somniferum NC_039368.1 1 CH_pso_9 13 22 4.9053e-28
Phaseolus vulgaris Chr05 1 CH_pvu_483 3 3 0.000983743
Rosa chinensis RcHm_v2.0_Chr1 1 CH_rch_452 4 10 0.0000323048
Rhododendron simsii chr10 1 CH_rsi_398 4 12 0.00019232
Sequoiadendron giganteum chr1 1 CH_sgi_1157 3 3 0.000148317
Sequoiadendron giganteum chr2 1 CH_sgi_129 8 10 4.07704e-17
Sequoiadendron giganteum chr3 1 CH_sgi_360 5 6 0.00000000193025
Sequoiadendron giganteum chr3 1 CH_sgi_433 5 7 0.00000000674761
Sequoiadendron giganteum chr1 1 CH_sgi_593 4 5 0.00000110059
Solanum lycopersicum SL4.0ch05 1 CH_sly_103 8 33 0.000000000480251
Trochodendron aralioides group18 1 CH_tar_186 4 4 0.00000265082
Trochodendron aralioides group3 1 CH_tar_543 4 11 0.000860427
Theobroma cacao Chromosome_3 1 CH_tca_367 3 3 0.000275339
Tripterygium wilfordii NC_052253.1 1 CH_twi_123 4 4 0.00000258263
Vanilla planifolia CM028161.1 1 CH_vpl_285 3 3 0.000392316
Zea mays 3 1 CH_zma_126 4 5 0.0000164334
Aethionema arabicum LG-4 2 CH_aar_15 9 12 1.10744e-16
Aethionema arabicum LG-2 2 CH_aar_96 4 4 0.00000221377
Amaranthus hybridus AmaHy_arrow1_Scaffold_6 2 CH_amhyb_76 4 6 0.00000363374
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.07 2 CH_arhy_388 4 5 0.0000144782
Brassica carinata ChrC01 2 CH_bca_442 4 4 0.00000579737
Brassica oleracea C3 2 CH_bol_423 3 3 0.000748704
Capsicum annuum PGAv.1.6.scaffold792 2 CH_can_153 4 4 0.000000358395
Corylus avellana 6 2 CH_cav_171 5 16 0.00000351802
Ceratophyllum demersum 7 2 CH_cde_16 6 10 0.00000000894028
Davidia involucrata GWHABJS00000003 2 CH_din_482 3 3 0.000519329
Durio zibethinus NW_019167827.1 2 CH_dzi_73 7 23 0.0000000228537
Erigeron canadensis Conyza_canadensis_scaffold:7 2 CH_eca_232 4 8 0.0000153807
Fragaria x ananassa Fvb6-1 2 CH_fan_453 4 8 0.000227216
Fragaria vesca Fvb6 2 CH_fve_94 6 14 0.00000000355251
Glycine max Gm13 2 CH_gma_259 4 4 0.00000633741
Helianthus annuus HanXRQChr14 2 CH_han_389 4 6 0.000018529
Lactuca sativa Lsat_1_v8_lg_9 2 CH_lsa_212 4 4 0.00000049522
Lactuca sativa Lsat_1_v8_lg_2 2 CH_lsa_430 3 3 0.000267611
Magnolia biondii Chr14 2 CH_mbi_257 5 24 0.00000664061
Magnolia biondii Chr15 2 CH_mbi_379 3 3 0.0000980757
Magnolia biondii Chr15 2 CH_mbi_483 4 16 0.000226902
Malus domestica Chr12 2 CH_mdo_409 4 8 0.0000759046
Olea europaea chr11 2 CH_oeu_392 3 3 0.000755874
Olea europaea chr19 2 CH_oeu_97 4 4 0.00000201749
Olea europaea chr8 2 CH_oeu_98 4 4 0.00000201749
Oryza sativa ssp. japonica chr11 2 CH_osa_174 4 6 0.0000133758
Oryza sativa ssp. japonica chr01 2 CH_osa_175 4 6 0.0000133758
Oryza sativa ssp. japonica chr05 2 CH_osa_338 3 3 0.000413235
Oryza sativa ssp. japonica chr12 2 CH_osa_73 5 6 0.000000011464
Prunus persica Pp06 2 CH_ppe_429 3 3 0.000257562
Pisum sativum chr5LG3 2 CH_psa_348 3 3 0.000348246
Pisum sativum chr6LG2 2 CH_psa_349 3 3 0.000348246
Papaver somniferum NW_020631041.1 2 CH_pso_8 13 22 4.9053e-28
Papaver somniferum NC_039368.1 2 CH_pso_9 13 22 4.9053e-28
Phaseolus vulgaris Chr05 2 CH_pvu_483 3 3 0.000983743
Rosa chinensis RcHm_v2.0_Chr1 2 CH_rch_452 4 10 0.0000323048
Rhododendron simsii chr10 2 CH_rsi_398 4 12 0.00019232
Sequoiadendron giganteum chr1 2 CH_sgi_1157 3 3 0.000148317
Sequoiadendron giganteum chr2 2 CH_sgi_129 8 10 4.07704e-17
Sequoiadendron giganteum chr3 2 CH_sgi_360 5 6 0.00000000193025
Sequoiadendron giganteum chr3 2 CH_sgi_433 5 7 0.00000000674761
Sequoiadendron giganteum chr1 2 CH_sgi_593 4 5 0.00000110059
Solanum lycopersicum SL4.0ch05 2 CH_sly_103 8 33 0.000000000480251
Trochodendron aralioides group18 2 CH_tar_186 4 4 0.00000265082
Trochodendron aralioides group3 2 CH_tar_543 4 11 0.000860427
Theobroma cacao Chromosome_3 2 CH_tca_367 3 3 0.000275339
Tripterygium wilfordii NC_052253.1 2 CH_twi_123 4 4 0.00000258263
Vanilla planifolia CM028161.1 2 CH_vpl_285 3 3 0.000392316
Zea mays 3 2 CH_zma_126 4 5 0.0000164334

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001