Functional clusters

Information

  • Type MapMan
  • Description RNA biosynthesis.transcriptional regulation.transcription factor (GeBP)

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Aethionema arabicum LG-5 1 CH_aar_219 4 59 0.000336571
Arabidopsis lyrata scaffold_7 1 CH_aly_210 3 4 0.0000402359
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.07 1 CH_arhy_282 3 7 0.00000094095
Arabidopsis thaliana Chr4 1 CH_ath_147 5 55 0.000000269908
Brassica carinata ChrB06 1 CH_bca_441 3 3 0.00000578233
Brassica carinata ChrC02 1 CH_bca_53 5 6 0.00000000000471522
Brassica napus C04 1 CH_bna_424 3 4 0.0000254764
Brassica rapa A01 1 CH_bra_72 4 5 0.0000000126082
Corylus avellana 2 1 CH_cav_487 2 2 0.000766695
Corylus avellana 5 1 CH_cav_488 2 2 0.000766695
Carpinus fangiana Cfa08 1 CH_cfa_261 3 14 0.000109431
Carya illinoinensis Chr08 1 CH_cil_568 2 2 0.000929742
Daucus carota DCARv2_Chr4 1 CH_dca_151 5 65 0.00000201922
Fragaria vesca Fvb6 1 CH_fve_479 2 2 0.000883652
Malus domestica Chr12 1 CH_mdo_756 2 2 0.000796344
Olea europaea scaffold180 1 CH_oeu_112 4 37 0.00000629657
Punica granatum NC_045127.1 1 CH_pgr_181 3 9 0.0000248084
Papaver somniferum NC_039360.1 1 CH_pso_387 3 6 0.0000202315
Phaseolus vulgaris Chr07 1 CH_pvu_476 2 2 0.000734727
Rosa chinensis RcHm_v2.0_Chr3 1 CH_rch_737 2 2 0.000398653
Rhododendron simsii chr11 1 CH_rsi_304 3 6 0.0000274641
Striga asiatica scaffold52 1 CH_sas_2 9 64 0.000000000000031146
Solanum lycopersicum SL4.0ch07 1 CH_sly_447 3 17 0.000294509
Schrenkiella parvula ch7-2 1 CH_spa_69 6 38 0.0000000100255
Solanum pennellii Spenn-ch07 1 CH_spe_116 4 10 0.0000000116337
Solanum tuberosum ST4.03ch07 1 CH_stu_104 4 5 0.000000000423878
Tarenaya hassleriana NW_010961290.1 1 CH_tha_90 3 7 0.0000214989
Trifolium pratense Tp57577_TGAC_v2_scaf_450 1 CH_tpr_419 2 2 0.000756974
Aethionema arabicum LG-5 2 CH_aar_219 4 59 0.000336571
Arabidopsis lyrata scaffold_7 2 CH_aly_210 3 4 0.0000402359
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.07 2 CH_arhy_282 3 7 0.00000094095
Arabidopsis thaliana Chr4 2 CH_ath_147 5 55 0.000000269908
Brassica carinata ChrB06 2 CH_bca_441 3 3 0.00000578233
Brassica carinata ChrC02 2 CH_bca_53 5 6 0.00000000000471522
Brassica rapa A01 2 CH_bra_72 4 5 0.0000000126082
Corylus avellana 2 2 CH_cav_487 2 2 0.000766695
Corylus avellana 5 2 CH_cav_488 2 2 0.000766695
Carpinus fangiana Cfa08 2 CH_cfa_261 3 14 0.000109431
Carya illinoinensis Chr08 2 CH_cil_568 2 2 0.000929742
Daucus carota DCARv2_Chr4 2 CH_dca_151 5 65 0.00000201922
Fragaria vesca Fvb6 2 CH_fve_479 2 2 0.000883652
Malus domestica Chr12 2 CH_mdo_756 2 2 0.000796344
Olea europaea scaffold180 2 CH_oeu_112 4 37 0.00000629657
Punica granatum NC_045127.1 2 CH_pgr_181 3 9 0.0000248084
Papaver somniferum NC_039360.1 2 CH_pso_387 3 6 0.0000202315
Phaseolus vulgaris Chr07 2 CH_pvu_476 2 2 0.000734727
Rosa chinensis RcHm_v2.0_Chr3 2 CH_rch_737 2 2 0.000398653
Rhododendron simsii chr11 2 CH_rsi_304 3 6 0.0000274641
Striga asiatica scaffold52 2 CH_sas_2 9 64 0.000000000000031146
Solanum lycopersicum SL4.0ch07 2 CH_sly_447 3 17 0.000294509
Schrenkiella parvula ch7-2 2 CH_spa_69 6 38 0.0000000100255
Solanum pennellii Spenn-ch07 2 CH_spe_116 4 10 0.0000000116337
Solanum tuberosum ST4.03ch07 2 CH_stu_104 4 5 0.000000000423878
Tarenaya hassleriana NW_010961290.1 2 CH_tha_90 3 7 0.0000214989
Trifolium pratense Tp57577_TGAC_v2_scaf_450 2 CH_tpr_419 2 2 0.000756974

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001