Functional clusters
Information
- Type MapMan
- Description RNA biosynthesis.transcriptional regulation.transcriptional repression.LEUNIG-SEUSS repressor complex.adapter component SEU/SLK
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Aethionema arabicum | LG-9 | 1 | CH_aar_261 | 2 | 3 | 0.000821031 |
| Arabidopsis lyrata | scaffold_7 | 1 | CH_aly_359 | 2 | 2 | 0.000396027 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.15 | 1 | CH_arhy_631 | 2 | 2 | 0.000449075 |
| Brassica carinata | ChrC06 | 1 | CH_bca_363 | 3 | 4 | 0.00000124736 |
| Brassica oleracea | C7 | 1 | CH_bol_378 | 2 | 2 | 0.000490292 |
| Brassica rapa | A03 | 1 | CH_bra_376 | 2 | 2 | 0.000901558 |
| Beta vulgaris | Chr5_EL10_PGA_scaffold2 | 1 | CH_bvu_297 | 2 | 2 | 0.000827917 |
| Cardamine hirsuta | Chr7 | 1 | CH_chi_352 | 2 | 2 | 0.000414723 |
| Capsella rubella | scaffold_7 | 1 | CH_cru_362 | 2 | 2 | 0.000438693 |
| Glycine max | Gm16 | 1 | CH_gma_592 | 2 | 2 | 0.00079707 |
| Lupinus albus | Lalb_Chr19 | 1 | CH_lal_91 | 3 | 3 | 0.000000231376 |
| Oryza sativa ssp. japonica | chr11 | 1 | CH_osa_268 | 2 | 2 | 0.000158437 |
| Physcomitrium patens | Chr25 | 1 | CH_ppa_50 | 3 | 5 | 0.00000315282 |
| Phaseolus vulgaris | Chr04 | 1 | CH_pvu_398 | 2 | 2 | 0.000440836 |
| Striga asiatica | scaffold221 | 1 | CH_sas_142 | 2 | 2 | 0.000625371 |
| Salvia bowleyana | GWHASIU00000002 | 1 | CH_sbo_372 | 2 | 2 | 0.000272988 |
| Solanum lycopersicum | SL4.0ch06 | 1 | CH_sly_463 | 2 | 2 | 0.000352164 |
| Schrenkiella parvula | ch7-4 | 1 | CH_spa_253 | 2 | 2 | 0.000472404 |
| Solanum pennellii | Spenn-ch06 | 1 | CH_spe_423 | 2 | 2 | 0.000266874 |
| Aethionema arabicum | LG-9 | 2 | CH_aar_261 | 2 | 3 | 0.000821031 |
| Arabidopsis lyrata | scaffold_7 | 2 | CH_aly_359 | 2 | 2 | 0.000396027 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.15 | 2 | CH_arhy_631 | 2 | 2 | 0.000449075 |
| Brassica carinata | ChrC06 | 2 | CH_bca_363 | 3 | 4 | 0.00000124736 |
| Brassica oleracea | C7 | 2 | CH_bol_378 | 2 | 2 | 0.000490292 |
| Brassica rapa | A03 | 2 | CH_bra_376 | 2 | 2 | 0.000901558 |
| Beta vulgaris | Chr5_EL10_PGA_scaffold2 | 2 | CH_bvu_297 | 2 | 2 | 0.000827917 |
| Cardamine hirsuta | Chr7 | 2 | CH_chi_352 | 2 | 2 | 0.000414723 |
| Capsella rubella | scaffold_7 | 2 | CH_cru_362 | 2 | 2 | 0.000438693 |
| Glycine max | Gm16 | 2 | CH_gma_592 | 2 | 2 | 0.00079707 |
| Lupinus albus | Lalb_Chr19 | 2 | CH_lal_91 | 3 | 3 | 0.000000231376 |
| Oryza sativa ssp. japonica | chr11 | 2 | CH_osa_268 | 2 | 2 | 0.000158437 |
| Physcomitrium patens | Chr25 | 2 | CH_ppa_50 | 3 | 5 | 0.00000315282 |
| Phaseolus vulgaris | Chr04 | 2 | CH_pvu_398 | 2 | 2 | 0.000440836 |
| Striga asiatica | scaffold221 | 2 | CH_sas_142 | 2 | 2 | 0.000625371 |
| Salvia bowleyana | GWHASIU00000002 | 2 | CH_sbo_372 | 2 | 2 | 0.000272988 |
| Solanum lycopersicum | SL4.0ch06 | 2 | CH_sly_463 | 2 | 2 | 0.000352164 |
| Schrenkiella parvula | ch7-4 | 2 | CH_spa_253 | 2 | 2 | 0.000472404 |
| Solanum pennellii | Spenn-ch06 | 2 | CH_spe_423 | 2 | 2 | 0.000266874 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |