Functional clusters

Information

  • Type MapMan
  • Description RNA biosynthesis.organelle machinery.RNA polymerase activities.plastid-encoded RNA polymerase (PEP) complex.core components

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Arabidopsis lyrata scaffold_2 1 CH_aly_255 3 26 0.0000678747
Amaranthus hybridus AmaHy_arrow1_Scaffold_10 1 CH_amhyb_31 5 71 0.0000000292718
Arabidopsis thaliana ChrC 1 CH_ath_83 3 3 0.00000000492473
Brassica carinata ChrC05 1 CH_bca_695 2 2 0.000128259
Brassica napus BNapus_Darmor_BZH_scaffold_253 1 CH_bna_139 4 28 0.00000000587942
Brassica rapa Brapa_scaffold_151 1 CH_bra_174 3 8 0.0000185664
Brassica rapa Brapa_scaffold_58 1 CH_bra_204 4 74 0.0000568642
Cicer arietinum L. Ca_LG2_v3 1 CH_car_152 2 2 0.0000778301
Cardamine hirsuta ChrC 1 CH_chi_199 3 32 0.0000355112
Daucus carota DCARv2_PT 1 CH_dca_89 3 3 0.0000000244062
Lupinus albus Lalb_Chr09 1 CH_lal_48 4 5 0.000000000075892
Lotus japonicus Contig00318 1 CH_lja_150 3 3 0.000000429537
Lonicera japonica GWHAAZE00000002 1 CH_lonja_102 6 75 0.0000000000243483
Punica granatum NC_035240.1 1 CH_pgr_90 3 3 0.0000000337834
Papaver somniferum NC_029434.1 1 CH_pso_169 3 3 0.00000000760956
Populus trichocarpa Chr13 1 CH_ptr_163 3 3 0.0000000501143
Populus trichocarpa Chr19 1 CH_ptr_486 2 2 0.000578001
Rosa chinensis RcHm_v2.0_CP 1 CH_rch_509 3 52 0.0000526329
Striga asiatica scaffold119 1 CH_sas_60 2 2 0.0000625371
Salix brachista GWHAAZH00000021 1 CH_sbr_216 2 2 0.000063014
Sechium edule Contig00297 1 CH_sed_238 4 56 0.000130438
Selaginella moellendorffii scaffold_175 1 CH_smo_88 3 35 0.0000854659
Utricularia gibba unitig_91 1 CH_ugi_14 3 3 0.00000000809468
Vanilla planifolia JADCNL010000483.1 1 CH_vpl_23 5 52 0.000000000580098
Arabidopsis lyrata scaffold_2 2 CH_aly_255 3 26 0.0000678747
Amaranthus hybridus AmaHy_arrow1_Scaffold_10 2 CH_amhyb_31 5 71 0.0000000292718
Arabidopsis thaliana ChrC 2 CH_ath_83 3 3 0.00000000492473
Brassica carinata ChrC05 2 CH_bca_695 2 2 0.000128259
Brassica rapa Brapa_scaffold_151 2 CH_bra_174 3 8 0.0000185664
Brassica rapa Brapa_scaffold_58 2 CH_bra_204 4 74 0.0000568642
Cicer arietinum L. Ca_LG2_v3 2 CH_car_152 2 2 0.0000778301
Cardamine hirsuta ChrC 2 CH_chi_199 3 32 0.0000355112
Daucus carota DCARv2_PT 2 CH_dca_89 3 3 0.0000000244062
Lupinus albus Lalb_Chr09 2 CH_lal_48 4 5 0.000000000075892
Lotus japonicus Contig00318 2 CH_lja_150 3 3 0.000000429537
Lonicera japonica GWHAAZE00000002 2 CH_lonja_102 6 75 0.0000000000243483
Punica granatum NC_035240.1 2 CH_pgr_90 3 3 0.0000000337834
Papaver somniferum NC_029434.1 2 CH_pso_169 3 3 0.00000000760956
Populus trichocarpa Chr13 2 CH_ptr_163 3 3 0.0000000501143
Populus trichocarpa Chr19 2 CH_ptr_486 2 2 0.000578001
Rosa chinensis RcHm_v2.0_CP 2 CH_rch_509 3 52 0.0000526329
Striga asiatica scaffold119 2 CH_sas_60 2 2 0.0000625371
Salix brachista GWHAAZH00000021 2 CH_sbr_216 2 2 0.000063014
Sechium edule Contig00297 2 CH_sed_238 4 56 0.000130438
Selaginella moellendorffii scaffold_175 2 CH_smo_88 3 35 0.0000854659
Utricularia gibba unitig_91 2 CH_ugi_14 3 3 0.00000000809468
Vanilla planifolia JADCNL010000483.1 2 CH_vpl_23 5 52 0.000000000580098

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001