Functional clusters

Information

  • Type MapMan
  • Description RNA biosynthesis.transcriptional regulation

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Arabidopsis thaliana Chr4 1 CH_ath_293 11 36 0.000122406
Brassica carinata ChrC06 1 CH_bca_651 9 11 0.0000768071
Brassica carinata ChrB07 1 CH_bca_972 20 69 0.00057913
Erigeron canadensis Conyza_canadensis_scaffold:8 1 CH_eca_294 17 64 0.000048101
Erythranthe guttata scaffold_2 1 CH_egut_323 22 78 0.0000877268
Erythranthe guttata scaffold_5 1 CH_egut_405 20 70 0.000354188
Eutrema salsugineum scaffold_15 1 CH_esa_312 19 62 0.000724066
Lonicera japonica GWHAAZE00000009 1 CH_lonja_241 15 35 0.000000785796
Manihot esculenta Chromosome03 1 CH_mes_261 8 8 0.0000231355
Olea europaea chr15 1 CH_oeu_121 15 35 0.0000131047
Sequoiadendron giganteum HRSCAF_1 1 CH_sgi_323 19 49 0.000000000218592
Vanilla planifolia CM028161.1 1 CH_vpl_228 14 36 0.000197897
Arabidopsis thaliana Chr4 2 CH_ath_293 11 36 0.000122406
Brassica carinata ChrC06 2 CH_bca_651 9 11 0.0000768071
Brassica carinata ChrB07 2 CH_bca_972 20 69 0.00057913
Erigeron canadensis Conyza_canadensis_scaffold:8 2 CH_eca_294 17 64 0.000048101
Erythranthe guttata scaffold_2 2 CH_egut_323 22 78 0.0000877268
Erythranthe guttata scaffold_5 2 CH_egut_405 20 70 0.000354188
Eutrema salsugineum scaffold_15 2 CH_esa_312 19 62 0.000724066
Lonicera japonica GWHAAZE00000009 2 CH_lonja_241 15 35 0.000000785796
Manihot esculenta Chromosome03 2 CH_mes_261 8 8 0.0000231355
Olea europaea chr15 2 CH_oeu_121 15 35 0.0000131047
Sequoiadendron giganteum HRSCAF_1 2 CH_sgi_323 19 49 0.000000000218592
Vanilla planifolia CM028161.1 2 CH_vpl_228 14 36 0.000197897

Available child term results

Ontology identifier Description Number of clusters
15.5.1.1 RNA biosynthesis.transcriptional regulation.C2C2 transcription factor superfamily.transcription factor (BBX-DBB) 4
15.5.1.2 RNA biosynthesis.transcriptional regulation.C2C2 transcription factor superfamily.transcription factor (BBX-CO) 4
15.5.1.3.1 RNA biosynthesis.transcriptional regulation.C2C2 transcription factor superfamily.GATA trancription factor families.transcription factor (A/B-GATA) 19
15.5.1.3.2 RNA biosynthesis.transcriptional regulation.C2C2 transcription factor superfamily.GATA trancription factor families.transcription factor (C-GATA) 69
15.5.1.3.3 RNA biosynthesis.transcriptional regulation.C2C2 transcription factor superfamily.GATA trancription factor families.transcription factor (D-GATA) 6
15.5.1.4 RNA biosynthesis.transcriptional regulation.C2C2 transcription factor superfamily.transcription factor (YABBY) 4
15.5.1.5 RNA biosynthesis.transcriptional regulation.C2C2 transcription factor superfamily.transcription factor (DOF) 49
15.5.11 RNA biosynthesis.transcriptional regulation.transcription factor (EIL) 12
15.5.12 RNA biosynthesis.transcriptional regulation.transcription factor (GRAS) 212
15.5.13 RNA biosynthesis.transcriptional regulation.transcription factor (HSF) 32
15.5.14 RNA biosynthesis.transcriptional regulation.transcription factor (MADS/AGL) 349
15.5.15 RNA biosynthesis.transcriptional regulation.transcription factor (C2H2-ZF) 73
15.5.16 RNA biosynthesis.transcriptional regulation.transcription factor (C3H-ZF) 55
15.5.17 RNA biosynthesis.transcriptional regulation.transcription factor (NAC) 248
15.5.18 RNA biosynthesis.transcriptional regulation.transcription factor (SBP) 17
15.5.19 RNA biosynthesis.transcriptional regulation.transcription factor (TCP) 26
15.5.2 RNA biosynthesis.transcriptional regulation.MYB transcription factor superfamily 11
15.5.2.1 RNA biosynthesis.transcriptional regulation.MYB transcription factor superfamily.transcription factor (MYB) 174
15.5.2.2 RNA biosynthesis.transcriptional regulation.MYB transcription factor superfamily.transcription factor (MYB-related) 71
15.5.2.3 RNA biosynthesis.transcriptional regulation.MYB transcription factor superfamily.transcription factor (GARP) 5
15.5.20 RNA biosynthesis.transcriptional regulation.transcription factor (Trihelix) 14
15.5.21 RNA biosynthesis.transcriptional regulation.transcription factor (TUB) 3
15.5.22.1 RNA biosynthesis.transcriptional regulation.WRKY transcription factor activity.transcription factor (WRKY) 99
15.5.22.2 RNA biosynthesis.transcriptional regulation.WRKY transcription factor activity.WRKY-regulatory transcriptional co-factor (VQ) 7
15.5.24 RNA biosynthesis.transcriptional regulation.transcription factor (AS2/LOB) 102
15.5.25 RNA biosynthesis.transcriptional regulation.transcription factor (ARID) 8
15.5.26 RNA biosynthesis.transcriptional regulation.transcription factor (CAMTA) 8
15.5.27 RNA biosynthesis.transcriptional regulation.transcription factor (ELF3) 22
15.5.28 RNA biosynthesis.transcriptional regulation.transcription factor (GeBP) 55
15.5.29 RNA biosynthesis.transcriptional regulation.transcription factor (PHD) 10
15.5.3 RNA biosynthesis.transcriptional regulation.Homeobox transcription factor superfamily 4
15.5.3.1 RNA biosynthesis.transcriptional regulation.Homeobox transcription factor superfamily.transcription factor (HD-ZIP I/II) 25
15.5.3.10 RNA biosynthesis.transcriptional regulation.Homeobox transcription factor superfamily.transcription factor (PINTOX) 8
15.5.3.11 RNA biosynthesis.transcriptional regulation.Homeobox transcription factor superfamily.transcription factor (NDX) 4
15.5.3.12 RNA biosynthesis.transcriptional regulation.Homeobox transcription factor superfamily.transcription factor (zf-HD) 58
15.5.3.2 RNA biosynthesis.transcriptional regulation.Homeobox transcription factor superfamily.transcription factor (HD-ZIP III) 2
15.5.3.3 RNA biosynthesis.transcriptional regulation.Homeobox transcription factor superfamily.transcription factor (HD-ZIP IV) 58
15.5.3.4 RNA biosynthesis.transcriptional regulation.Homeobox transcription factor superfamily.transcription factor (KNOX) 4
15.5.3.5 RNA biosynthesis.transcriptional regulation.Homeobox transcription factor superfamily.transcription factor (BEL) 2
15.5.3.6 RNA biosynthesis.transcriptional regulation.Homeobox transcription factor superfamily.transcription factor (WOX) 29
15.5.3.7 RNA biosynthesis.transcriptional regulation.Homeobox transcription factor superfamily.transcription factor (HOX) 4
15.5.3.8 RNA biosynthesis.transcriptional regulation.Homeobox transcription factor superfamily.transcription factor (PHD) 4
15.5.3.9 RNA biosynthesis.transcriptional regulation.Homeobox transcription factor superfamily.transcription factor (LD) 17
15.5.30 RNA biosynthesis.transcriptional regulation.transcription factor (bHLH) 98
15.5.31 RNA biosynthesis.transcriptional regulation.transcription factor (S1Fa) 7
15.5.32 RNA biosynthesis.transcriptional regulation.transcription factor (BBR/BPC) 18
15.5.33 RNA biosynthesis.transcriptional regulation.transcription factor (BSD) 4
15.5.34 RNA biosynthesis.transcriptional regulation.transcription factor (VOZ) 6
15.5.35 RNA biosynthesis.transcriptional regulation.transcription factor (OFP) 14
15.5.37 RNA biosynthesis.transcriptional regulation.transcription factor (BZR) 2
15.5.38 RNA biosynthesis.transcriptional regulation.transcription factor (LFY) 8
15.5.39 RNA biosynthesis.transcriptional regulation.transcription factor (LIM) 2
15.5.4 RNA biosynthesis.transcriptional regulation.bZIP transcription factor superfamily 4
15.5.4.1 RNA biosynthesis.transcriptional regulation.bZIP transcription factor superfamily.transcription factor (bZIP) 15
15.5.4.2 RNA biosynthesis.transcriptional regulation.bZIP transcription factor superfamily.transcription factor (DOG) 57
15.5.4.3 RNA biosynthesis.transcriptional regulation.bZIP transcription factor superfamily.transcription factor (HY5) 4
15.5.4.4.1 RNA biosynthesis.transcriptional regulation.bZIP transcription factor superfamily.TGA transcription factor activity.transcription factor (TGA) 2
15.5.4.4.2 RNA biosynthesis.transcriptional regulation.bZIP transcription factor superfamily.TGA transcription factor activity.transcriptional co-activator (BOP) 4
15.5.40 RNA biosynthesis.transcriptional regulation.transcription factor (HRT) 27
15.5.41 RNA biosynthesis.transcriptional regulation.transcription factor (PLATZ) 7
15.5.42 RNA biosynthesis.transcriptional regulation.transcription factor (ULT) 14
15.5.43 RNA biosynthesis.transcriptional regulation.transcription factor (TIFY) 28
15.5.44 RNA biosynthesis.transcriptional regulation.transcription factor (FRS/FRF) 108
15.5.45 RNA biosynthesis.transcriptional regulation.transcription factor (SRS) 5
15.5.46 RNA biosynthesis.transcriptional regulation.transcription factor (SAP) 2
15.5.47 RNA biosynthesis.transcriptional regulation.transcription factor (HUA2) 8
15.5.48 RNA biosynthesis.transcriptional regulation.transcription factor (DPB3) 2
15.5.49.1 RNA biosynthesis.transcriptional regulation.NF-Y transcription factor complex.component NF-YA 6
15.5.49.2 RNA biosynthesis.transcriptional regulation.NF-Y transcription factor complex.component NF-YB 25
15.5.49.3 RNA biosynthesis.transcriptional regulation.NF-Y transcription factor complex.component NF-YC 27
15.5.5.1 RNA biosynthesis.transcriptional regulation.B3 transcription factor superfamily.transcription factor (ARF) 25
15.5.5.2 RNA biosynthesis.transcriptional regulation.B3 transcription factor superfamily.transcription factor (REM) 278
15.5.5.3 RNA biosynthesis.transcriptional regulation.B3 transcription factor superfamily.transcription factor (RAV/NGATHA) 8
15.5.5.4 RNA biosynthesis.transcriptional regulation.B3 transcription factor superfamily.transcription factor (LAV-VAL) 6
15.5.5.5 RNA biosynthesis.transcriptional regulation.B3 transcription factor superfamily.transcription factor (LAV-ABI3) 18
15.5.50.1 RNA biosynthesis.transcriptional regulation.GRF-GIF transcription factor complex.component GRF 10
15.5.50.2 RNA biosynthesis.transcriptional regulation.GRF-GIF transcription factor complex.cofactor component GIF 8
15.5.51 RNA biosynthesis.transcriptional regulation.transcriptional repression 10
15.5.51.2 RNA biosynthesis.transcriptional regulation.transcriptional repression.transcriptional co-repressor (ECAP) 8
15.5.51.3 RNA biosynthesis.transcriptional regulation.transcriptional repression.transcriptional co-repressor (AFP/NINJA) 16
15.5.51.4 RNA biosynthesis.transcriptional regulation.transcriptional repression.transcriptional repressor (TIE/SPL) 10
15.5.51.5 RNA biosynthesis.transcriptional regulation.transcriptional repression.transcriptional repressor (NF-X1) 12
15.5.51.6.1 RNA biosynthesis.transcriptional regulation.transcriptional repression.LEUNIG-SEUSS repressor complex.component LUG/LUH 33
15.5.51.6.2 RNA biosynthesis.transcriptional regulation.transcriptional repression.LEUNIG-SEUSS repressor complex.adapter component SEU/SLK 38
15.5.51.7.1 RNA biosynthesis.transcriptional regulation.transcriptional repression.PPD-KIX repressor complex.component PEAPOD 8
15.5.51.7.2 RNA biosynthesis.transcriptional regulation.transcriptional repression.PPD-KIX repressor complex.component KIX 4
15.5.52 RNA biosynthesis.transcriptional regulation.transcriptional co-activator (BET/GTE) 15
15.5.53 RNA biosynthesis.transcriptional regulation.transcriptional co-activator (P15) 11
15.5.54 RNA biosynthesis.transcriptional regulation.transcriptional co-regulator (Pirin) 23
15.5.6 RNA biosynthesis.transcriptional regulation.NIN-like transcription factor superfamily 4
15.5.6.1 RNA biosynthesis.transcriptional regulation.NIN-like transcription factor superfamily.transcription factor (RKD) 6
15.5.6.2 RNA biosynthesis.transcriptional regulation.NIN-like transcription factor superfamily.transcription factor (NLP) 70
15.5.7 RNA biosynthesis.transcriptional regulation.AP2/ERF transcription factor superfamily 20
15.5.7.1 RNA biosynthesis.transcriptional regulation.AP2/ERF transcription factor superfamily.transcription factor (ERF) 424
15.5.7.2 RNA biosynthesis.transcriptional regulation.AP2/ERF transcription factor superfamily.transcription factor (DREB) 105
15.5.7.3 RNA biosynthesis.transcriptional regulation.AP2/ERF transcription factor superfamily.transcription factor (AP2) 10
15.5.7.4 RNA biosynthesis.transcriptional regulation.AP2/ERF transcription factor superfamily.transcription factor (APD1) 3
15.5.7.5 RNA biosynthesis.transcriptional regulation.AP2/ERF transcription factor superfamily.transcription factor (AP2-RAV) 18
15.5.8 RNA biosynthesis.transcriptional regulation.AHL transcription factor superfamily 7
15.5.8.2 RNA biosynthesis.transcriptional regulation.AHL transcription factor superfamily.clade-B transcription factor (AHL) 3
15.5.9 RNA biosynthesis.transcriptional regulation.transcription factor (TCX/CPP) 6

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001