Functional clusters

Information

  • Type MapMan
  • Description RNA biosynthesis.transcriptional regulation.C2C2 transcription factor superfamily.GATA trancription factor families.transcription factor (A/B-GATA)

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Aquilegia oxysepala CHR03 1 CH_aox_118 3 3 0.0000170869
Brassica carinata ChrB04 1 CH_bca_642 3 3 0.000065311
Brassica carinata ChrC07 1 CH_bca_75 5 5 0.0000000000483498
Fragaria x ananassa Fvb3-2 1 CH_fan_576 3 7 0.00058343
Malus domestica Chr16 1 CH_mdo_306 3 3 0.00000436589
Medicago truncatula chr7 1 CH_mtr_320 4 8 0.000000345358
Papaver somniferum NC_039366.1 1 CH_pso_511 3 7 0.000189942
Sequoiadendron giganteum chr6 1 CH_sgi_169 6 8 0.00000000000000669691
Sequoiadendron giganteum chr8 1 CH_sgi_641 3 3 0.00000405821
Zea mays 4 1 CH_zma_115 4 12 0.00000541642
Aquilegia oxysepala CHR03 2 CH_aox_118 3 3 0.0000170869
Brassica carinata ChrB04 2 CH_bca_642 3 3 0.000065311
Brassica carinata ChrC07 2 CH_bca_75 5 5 0.0000000000483498
Fragaria x ananassa Fvb3-2 2 CH_fan_576 3 7 0.00058343
Malus domestica Chr16 2 CH_mdo_306 3 3 0.00000436589
Papaver somniferum NC_039366.1 2 CH_pso_511 3 7 0.000189942
Sequoiadendron giganteum chr6 2 CH_sgi_169 6 8 0.00000000000000669691
Sequoiadendron giganteum chr8 2 CH_sgi_641 3 3 0.00000405821
Zea mays 4 2 CH_zma_115 4 12 0.00000541642

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001