Functional clusters
Information
- Type MapMan
- Description RNA biosynthesis.transcriptional regulation.transcription factor (C2H2-ZF)
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Amaranthus hybridus | AmaHy_arrow1_Scaffold_2 | 1 | CH_amhyb_81 | 5 | 13 | 0.00000496239 |
| Amaranthus hybridus | AmaHy_arrow1_Scaffold_6 | 1 | CH_amhyb_99 | 4 | 6 | 0.0000217639 |
| Arabidopsis thaliana | Chr3 | 1 | CH_ath_414 | 3 | 4 | 0.000702932 |
| Brassica carinata | ChrB02 | 1 | CH_bca_215 | 6 | 10 | 0.0000000500603 |
| Brassica carinata | ChrC05 | 1 | CH_bca_506 | 4 | 4 | 0.0000178049 |
| Brassica carinata | ChrB03 | 1 | CH_bca_834 | 4 | 6 | 0.000265495 |
| Beta vulgaris | Chr9_EL10_PGA_scaffold8 | 1 | CH_bvu_120 | 5 | 12 | 0.00000286511 |
| Camellia sinensis var. sinensis | Chr11 | 1 | CH_camsi_443 | 5 | 14 | 0.00000914568 |
| Camellia sinensis var. sinensis | Chr3 | 1 | CH_camsi_447 | 4 | 5 | 0.00000929384 |
| Capsicum annuum | PGAv.1.6.scaffold546 | 1 | CH_can_427 | 3 | 3 | 0.000691264 |
| Carya illinoinensis | Chr09 | 1 | CH_cil_308 | 4 | 4 | 0.0000119326 |
| Carya illinoinensis | Chr10 | 1 | CH_cil_387 | 4 | 6 | 0.000177747 |
| Daucus carota | DCARv2_Chr2 | 1 | CH_dca_174 | 4 | 4 | 0.00000501149 |
| Daucus carota | DCARv2_Chr5 | 1 | CH_dca_85 | 5 | 5 | 0.000000017421 |
| Eucalyptus grandis | Chr02 | 1 | CH_egr_78 | 10 | 10 | 8.00736e-22 |
| Erythranthe guttata | scaffold_2 | 1 | CH_egut_71 | 6 | 6 | 0.0000000000484959 |
| Helianthus annuus | HanXRQChr17 | 1 | CH_han_201 | 5 | 5 | 0.0000000120703 |
| Lactuca sativa | Lsat_1_v8_lg_5 | 1 | CH_lsa_323 | 4 | 6 | 0.0000466771 |
| Manihot esculenta | Chromosome01 | 1 | CH_mes_255 | 4 | 4 | 0.0000146011 |
| Olea europaea | chr15 | 1 | CH_oeu_9 | 12 | 34 | 6.68359e-17 |
| Petunia axillaris | Peaxi162Scf00411 | 1 | CH_pax_366 | 3 | 3 | 0.000932449 |
| Pisum sativum | chr6LG2 | 1 | CH_psa_391 | 3 | 3 | 0.000743285 |
| Papaver somniferum | NW_020648748.1 | 1 | CH_pso_31 | 9 | 12 | 6.0329e-18 |
| Papaver somniferum | NC_039366.1 | 1 | CH_pso_65 | 8 | 14 | 0.0000000000000443646 |
| Quercus lobata | 7 | 1 | CH_qlo_1003 | 3 | 3 | 0.000749543 |
| Quercus lobata | 7 | 1 | CH_qlo_325 | 5 | 5 | 0.00000000514636 |
| Rosa chinensis | RcHm_v2.0_Chr5 | 1 | CH_rch_259 | 5 | 9 | 0.0000000929925 |
| Rosa chinensis | RcHm_v2.0_Chr3 | 1 | CH_rch_369 | 4 | 5 | 0.00000221319 |
| Simmondsia chinensis | GWHAASQ00000018 | 1 | CH_sci_13 | 8 | 9 | 0.00000000000000361984 |
| Sequoiadendron giganteum | chr6 | 1 | CH_sgi_995 | 3 | 3 | 0.0000986786 |
| Sequoiadendron giganteum | chr3 | 1 | CH_sgi_996 | 3 | 3 | 0.0000986786 |
| Sequoiadendron giganteum | chr3 | 1 | CH_sgi_997 | 3 | 3 | 0.0000986786 |
| Solanum pennellii | Spenn-ch11 | 1 | CH_spe_187 | 4 | 4 | 0.00000121394 |
| Solanum tuberosum | ST4.03ch11 | 1 | CH_stu_57 | 7 | 7 | 0.0000000000000848723 |
| Zea mays | 1 | 1 | CH_zma_142 | 4 | 5 | 0.000042731 |
| Zea mays | 7 | 1 | CH_zma_143 | 4 | 5 | 0.000042731 |
| Amaranthus hybridus | AmaHy_arrow1_Scaffold_2 | 2 | CH_amhyb_81 | 5 | 13 | 0.00000496239 |
| Amaranthus hybridus | AmaHy_arrow1_Scaffold_6 | 2 | CH_amhyb_99 | 4 | 6 | 0.0000217639 |
| Arabidopsis thaliana | Chr3 | 2 | CH_ath_414 | 3 | 4 | 0.000702932 |
| Brassica carinata | ChrB02 | 2 | CH_bca_215 | 6 | 10 | 0.0000000500603 |
| Brassica carinata | ChrC05 | 2 | CH_bca_506 | 4 | 4 | 0.0000178049 |
| Brassica carinata | ChrB03 | 2 | CH_bca_834 | 4 | 6 | 0.000265495 |
| Beta vulgaris | Chr9_EL10_PGA_scaffold8 | 2 | CH_bvu_120 | 5 | 12 | 0.00000286511 |
| Camellia sinensis var. sinensis | Chr11 | 2 | CH_camsi_443 | 5 | 14 | 0.00000914568 |
| Camellia sinensis var. sinensis | Chr3 | 2 | CH_camsi_447 | 4 | 5 | 0.00000929384 |
| Capsicum annuum | PGAv.1.6.scaffold546 | 2 | CH_can_427 | 3 | 3 | 0.000691264 |
| Carya illinoinensis | Chr09 | 2 | CH_cil_308 | 4 | 4 | 0.0000119326 |
| Carya illinoinensis | Chr10 | 2 | CH_cil_387 | 4 | 6 | 0.000177747 |
| Daucus carota | DCARv2_Chr2 | 2 | CH_dca_174 | 4 | 4 | 0.00000501149 |
| Daucus carota | DCARv2_Chr5 | 2 | CH_dca_85 | 5 | 5 | 0.000000017421 |
| Eucalyptus grandis | Chr01 | 2 | CH_egr_537 | 4 | 4 | 0.0000021728 |
| Eucalyptus grandis | Chr02 | 2 | CH_egr_78 | 10 | 10 | 8.00736e-22 |
| Erythranthe guttata | scaffold_2 | 2 | CH_egut_71 | 6 | 6 | 0.0000000000484959 |
| Helianthus annuus | HanXRQChr17 | 2 | CH_han_201 | 5 | 5 | 0.0000000120703 |
| Lactuca sativa | Lsat_1_v8_lg_5 | 2 | CH_lsa_323 | 4 | 6 | 0.0000466771 |
| Manihot esculenta | Chromosome01 | 2 | CH_mes_255 | 4 | 4 | 0.0000146011 |
| Olea europaea | chr15 | 2 | CH_oeu_9 | 12 | 34 | 6.68359e-17 |
| Petunia axillaris | Peaxi162Scf00411 | 2 | CH_pax_366 | 3 | 3 | 0.000932449 |
| Pisum sativum | chr6LG2 | 2 | CH_psa_391 | 3 | 3 | 0.000743285 |
| Papaver somniferum | NW_020648748.1 | 2 | CH_pso_31 | 9 | 12 | 6.0329e-18 |
| Papaver somniferum | NC_039366.1 | 2 | CH_pso_65 | 8 | 14 | 0.0000000000000443646 |
| Quercus lobata | 7 | 2 | CH_qlo_1003 | 3 | 3 | 0.000749543 |
| Quercus lobata | 7 | 2 | CH_qlo_325 | 5 | 5 | 0.00000000514636 |
| Rosa chinensis | RcHm_v2.0_Chr5 | 2 | CH_rch_259 | 5 | 9 | 0.0000000929925 |
| Rosa chinensis | RcHm_v2.0_Chr3 | 2 | CH_rch_369 | 4 | 5 | 0.00000221319 |
| Simmondsia chinensis | GWHAASQ00000018 | 2 | CH_sci_13 | 8 | 9 | 0.00000000000000361984 |
| Sequoiadendron giganteum | chr6 | 2 | CH_sgi_995 | 3 | 3 | 0.0000986786 |
| Sequoiadendron giganteum | chr3 | 2 | CH_sgi_996 | 3 | 3 | 0.0000986786 |
| Sequoiadendron giganteum | chr3 | 2 | CH_sgi_997 | 3 | 3 | 0.0000986786 |
| Solanum pennellii | Spenn-ch11 | 2 | CH_spe_187 | 4 | 4 | 0.00000121394 |
| Solanum tuberosum | ST4.03ch11 | 2 | CH_stu_57 | 7 | 7 | 0.0000000000000848723 |
| Zea mays | 1 | 2 | CH_zma_142 | 4 | 5 | 0.000042731 |
| Zea mays | 7 | 2 | CH_zma_143 | 4 | 5 | 0.000042731 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |