Functional clusters

Information

  • Type MapMan
  • Description RNA biosynthesis.organelle machinery.RNA polymerase activities.plastid-encoded RNA polymerase (PEP) complex.essential co-factor components.component PAP1/TAC3

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Corylus avellana 2 1 CH_cav_230 2 2 0.0000766695
Ceratophyllum demersum 1 1 CH_cde_77 2 2 0.0000789796
Carya illinoinensis Chr07 1 CH_cil_338 2 2 0.0000619828
Citrullus lanatus CG_Chr03 1 CH_cla_34 3 4 0.0000000472183
Carica papaya supercontig_51 1 CH_cpa_259 2 3 0.000285185
Hydrangea macrophylla Hma1.2p1_0123F.1 1 CH_hma_31 3 3 0.0000000185113
Vaccinium macrocarpon chr5_Vaccinium_macrocarpon_Stevens_v1 1 CH_vma_80 3 3 0.0000000129529
Corylus avellana 2 2 CH_cav_230 2 2 0.0000766695
Ceratophyllum demersum 1 2 CH_cde_77 2 2 0.0000789796
Carya illinoinensis Chr07 2 CH_cil_338 2 2 0.0000619828
Citrullus lanatus CG_Chr03 2 CH_cla_34 3 4 0.0000000472183
Carica papaya supercontig_51 2 CH_cpa_259 2 3 0.000285185
Hydrangea macrophylla Hma1.2p1_0123F.1 2 CH_hma_31 3 3 0.0000000185113
Vaccinium macrocarpon chr5_Vaccinium_macrocarpon_Stevens_v1 2 CH_vma_80 3 3 0.0000000129529

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001