Functional clusters

Information

  • Type MapMan
  • Description RNA biosynthesis.transcriptional regulation.NIN-like transcription factor superfamily.transcription factor (NLP)

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Anthoceros agrestis Sc2ySwM_228 1 CH_aag_105 2 2 0.0000802568
Camellia sinensis var. sinensis Chr14 1 CH_camsi_382 4 9 0.00000239966
Camellia sinensis var. sinensis Chr5 1 CH_camsi_393 6 79 0.00000281525
Camellia sinensis var. sinensis Chr12 1 CH_camsi_431 4 11 0.00000627693
Camellia sinensis var. sinensis Chr14 1 CH_camsi_49 8 22 0.00000000000000164433
Camellia sinensis var. sinensis Chr14 1 CH_camsi_65 9 61 0.0000000000000566682
Daucus carota DCARv2_Chr9 1 CH_dca_26 6 16 0.000000000000325635
Davidia involucrata GWHABJS00000019 1 CH_din_119 4 6 0.0000000711516
Davidia involucrata GWHABJS00000018 1 CH_din_120 4 6 0.0000000711516
Davidia involucrata GWHABJS00000009 1 CH_din_382 3 6 0.000172364
Davidia involucrata GWHABJS00000002 1 CH_din_455 4 41 0.00047294
Erigeron canadensis Conyza_canadensis_scaffold:8 1 CH_eca_133 4 8 0.0000000734613
Erigeron canadensis Conyza_canadensis_scaffold:2 1 CH_eca_40 6 16 0.000000000000887136
Helianthus annuus HanXRQChr08 1 CH_han_217 4 5 0.0000000571392
Helianthus annuus HanXRQChr06 1 CH_han_26 9 20 1.46532e-19
Helianthus annuus HanXRQChr17 1 CH_han_613 4 30 0.000309061
Hydrangea macrophylla Hma1.2p1_0359F.1 1 CH_hma_74 3 3 0.00000155495
Lonicera japonica GWHAAZE00000003 1 CH_lonja_10 16 62 1.72081e-31
Lonicera japonica GWHAAZE00000008 1 CH_lonja_192 5 15 0.0000000800215
Lonicera japonica GWHAAZE00000003 1 CH_lonja_328 3 3 0.0000321934
Lactuca sativa Lsat_1_v8_lg_4 1 CH_lsa_246 3 4 0.000001902
Malus domestica Chr06 1 CH_mdo_744 2 2 0.000796344
Nicotiana tabacum Nitab4.5_0000175 1 CH_nta_165 2 2 0.000658364
Populus trichocarpa Chr17 1 CH_ptr_69 6 14 0.000000000000807319
Quercus lobata 10 1 CH_qlo_536 3 6 0.00000279802
Rhododendron simsii chr02 1 CH_rsi_29 10 56 3.88857e-20
Salix brachista GWHAAZH00000007 1 CH_sbr_259 3 7 0.00016985
Simmondsia chinensis GWHAASQ00000022 1 CH_sci_78 3 3 0.000000608964
Sequoiadendron giganteum chr3 1 CH_sgi_486 3 3 0.0000000355983
Selaginella moellendorffii scaffold_59 1 CH_smo_149 2 2 0.000560224
Solanum pennellii Spenn-ch08 1 CH_spe_568 2 2 0.00093406
Solanum tuberosum ST4.03ch11 1 CH_stu_397 3 9 0.0000545388
Vaccinium macrocarpon chr8_Vaccinium_macrocarpon_Stevens_v1 1 CH_vma_155 4 28 0.00000343439
Vanilla planifolia CM028150.1 1 CH_vpl_88 3 11 0.00000540224
Vitis vinifera chr2 1 CH_vvi_435 2 2 0.00076063
Anthoceros agrestis Sc2ySwM_228 2 CH_aag_105 2 2 0.0000802568
Camellia sinensis var. sinensis Chr14 2 CH_camsi_382 4 9 0.00000239966
Camellia sinensis var. sinensis Chr5 2 CH_camsi_393 6 79 0.00000281525
Camellia sinensis var. sinensis Chr12 2 CH_camsi_431 4 11 0.00000627693
Camellia sinensis var. sinensis Chr14 2 CH_camsi_49 8 22 0.00000000000000164433
Camellia sinensis var. sinensis Chr14 2 CH_camsi_65 9 61 0.0000000000000566682
Daucus carota DCARv2_Chr9 2 CH_dca_26 6 16 0.000000000000325635
Davidia involucrata GWHABJS00000019 2 CH_din_119 4 6 0.0000000711516
Davidia involucrata GWHABJS00000018 2 CH_din_120 4 6 0.0000000711516
Davidia involucrata GWHABJS00000009 2 CH_din_382 3 6 0.000172364
Davidia involucrata GWHABJS00000002 2 CH_din_455 4 41 0.00047294
Erigeron canadensis Conyza_canadensis_scaffold:8 2 CH_eca_133 4 8 0.0000000734613
Erigeron canadensis Conyza_canadensis_scaffold:2 2 CH_eca_40 6 16 0.000000000000887136
Helianthus annuus HanXRQChr08 2 CH_han_217 4 5 0.0000000571392
Helianthus annuus HanXRQChr06 2 CH_han_26 9 20 1.46532e-19
Helianthus annuus HanXRQChr17 2 CH_han_613 4 30 0.000309061
Hydrangea macrophylla Hma1.2p1_0359F.1 2 CH_hma_74 3 3 0.00000155495
Lonicera japonica GWHAAZE00000003 2 CH_lonja_10 16 62 1.72081e-31
Lonicera japonica GWHAAZE00000008 2 CH_lonja_192 5 15 0.0000000800215
Lonicera japonica GWHAAZE00000003 2 CH_lonja_328 3 3 0.0000321934
Lactuca sativa Lsat_1_v8_lg_4 2 CH_lsa_246 3 4 0.000001902
Malus domestica Chr06 2 CH_mdo_744 2 2 0.000796344
Nicotiana tabacum Nitab4.5_0000175 2 CH_nta_165 2 2 0.000658364
Populus trichocarpa Chr17 2 CH_ptr_69 6 14 0.000000000000807319
Quercus lobata 10 2 CH_qlo_536 3 6 0.00000279802
Rhododendron simsii chr02 2 CH_rsi_29 10 56 3.88857e-20
Salix brachista GWHAAZH00000007 2 CH_sbr_259 3 7 0.00016985
Simmondsia chinensis GWHAASQ00000022 2 CH_sci_78 3 3 0.000000608964
Sequoiadendron giganteum chr3 2 CH_sgi_486 3 3 0.0000000355983
Selaginella moellendorffii scaffold_59 2 CH_smo_149 2 2 0.000560224
Solanum pennellii Spenn-ch08 2 CH_spe_568 2 2 0.00093406
Solanum tuberosum ST4.03ch11 2 CH_stu_397 3 9 0.0000545388
Vaccinium macrocarpon chr8_Vaccinium_macrocarpon_Stevens_v1 2 CH_vma_155 4 28 0.00000343439
Vanilla planifolia CM028150.1 2 CH_vpl_88 3 11 0.00000540224
Vitis vinifera chr2 2 CH_vvi_435 2 2 0.00076063

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001