Functional clusters
Information
- Type MapMan
- Description RNA biosynthesis.transcriptional regulation.transcription factor (TCP)
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Brassica carinata | ChrC01 | 1 | CH_bca_763 | 4 | 20 | 0.000200452 |
| Brassica carinata | ChrC08 | 1 | CH_bca_958 | 3 | 5 | 0.000520813 |
| Carica papaya | supercontig_65 | 1 | CH_cpa_29 | 4 | 4 | 0.0000000099918 |
| Daucus carota | DCARv2_Chr2 | 1 | CH_dca_142 | 4 | 5 | 0.000000895172 |
| Daucus carota | DCARv2_Chr1 | 1 | CH_dca_4 | 14 | 17 | 1.95876e-33 |
| Erigeron canadensis | Conyza_canadensis_scaffold:2 | 1 | CH_eca_90 | 4 | 4 | 0.0000000047573 |
| Helianthus annuus | HanXRQChr04 | 1 | CH_han_741 | 3 | 7 | 0.000833821 |
| Magnolia biondii | Chr19 | 1 | CH_mbi_299 | 3 | 5 | 0.0000288536 |
| Physcomitrium patens | Chr03 | 1 | CH_ppa_63 | 3 | 10 | 0.0000135066 |
| Quercus lobata | 10 | 1 | CH_qlo_709 | 3 | 5 | 0.0000615271 |
| Rhododendron simsii | chr10 | 1 | CH_rsi_174 | 4 | 5 | 0.000000070703 |
| Sequoiadendron giganteum | chr9 | 1 | CH_sgi_664 | 3 | 4 | 0.00000797194 |
| Solanum tuberosum | ST4.03ch03 | 1 | CH_stu_318 | 3 | 3 | 0.0000177068 |
| Brassica carinata | ChrC01 | 2 | CH_bca_763 | 4 | 20 | 0.000200452 |
| Brassica carinata | ChrC08 | 2 | CH_bca_958 | 3 | 5 | 0.000520813 |
| Carica papaya | supercontig_65 | 2 | CH_cpa_29 | 4 | 4 | 0.0000000099918 |
| Daucus carota | DCARv2_Chr2 | 2 | CH_dca_142 | 4 | 5 | 0.000000895172 |
| Daucus carota | DCARv2_Chr1 | 2 | CH_dca_4 | 14 | 17 | 1.95876e-33 |
| Erigeron canadensis | Conyza_canadensis_scaffold:2 | 2 | CH_eca_90 | 4 | 4 | 0.0000000047573 |
| Helianthus annuus | HanXRQChr04 | 2 | CH_han_741 | 3 | 7 | 0.000833821 |
| Magnolia biondii | Chr19 | 2 | CH_mbi_299 | 3 | 5 | 0.0000288536 |
| Physcomitrium patens | Chr03 | 2 | CH_ppa_63 | 3 | 10 | 0.0000135066 |
| Quercus lobata | 10 | 2 | CH_qlo_709 | 3 | 5 | 0.0000615271 |
| Rhododendron simsii | chr10 | 2 | CH_rsi_174 | 4 | 5 | 0.000000070703 |
| Sequoiadendron giganteum | chr9 | 2 | CH_sgi_664 | 3 | 4 | 0.00000797194 |
| Solanum tuberosum | ST4.03ch03 | 2 | CH_stu_318 | 3 | 3 | 0.0000177068 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |