Functional clusters
Information
- Type MapMan
- Description RNA biosynthesis.transcriptional regulation.transcription factor (bHLH)
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Aquilegia oxysepala | CHR07 | 1 | CH_aox_99 | 6 | 17 | 0.00000224138 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.09 | 1 | CH_arhy_440 | 4 | 4 | 0.0000598623 |
| Brassica carinata | ChrB06 | 1 | CH_bca_1078 | 6 | 24 | 0.000759143 |
| Brassica carinata | ChrB07 | 1 | CH_bca_829 | 5 | 10 | 0.000240854 |
| Camellia sinensis var. sinensis | Chr2 | 1 | CH_camsi_575 | 5 | 12 | 0.0000648719 |
| Camellia sinensis var. sinensis | Chr6 | 1 | CH_camsi_584 | 4 | 5 | 0.0000932186 |
| Camellia sinensis var. sinensis | Chr1 | 1 | CH_camsi_759 | 6 | 33 | 0.000375418 |
| Coffea canephora | chr5 | 1 | CH_ccan_297 | 4 | 43 | 0.00031224 |
| Citrus clementina | scaffold_2 | 1 | CH_ccl_200 | 5 | 7 | 0.00000179831 |
| Chenopodium quinoa | C_Quinoa_Scaffold_3796 | 1 | CH_cqu_298 | 4 | 4 | 0.0000308674 |
| Chenopodium quinoa | C_Quinoa_Scaffold_3970 | 1 | CH_cqu_480 | 4 | 6 | 0.000459189 |
| Daucus carota | DCARv2_Chr5 | 1 | CH_dca_212 | 4 | 4 | 0.0000418178 |
| Daucus carota | DCARv2_Chr4 | 1 | CH_dca_213 | 4 | 4 | 0.0000418178 |
| Daucus carota | DCARv2_Chr5 | 1 | CH_dca_217 | 5 | 10 | 0.0000612992 |
| Daucus carota | DCARv2_Chr2 | 1 | CH_dca_327 | 4 | 5 | 0.000208085 |
| Durio zibethinus | NW_019167827.1 | 1 | CH_dzi_299 | 5 | 12 | 0.000340038 |
| Eucalyptus grandis | Chr05 | 1 | CH_egr_262 | 7 | 9 | 0.0000000000482113 |
| Erythranthe guttata | scaffold_13 | 1 | CH_egut_268 | 5 | 11 | 0.0000580314 |
| Helianthus annuus | HanXRQChr02 | 1 | CH_han_398 | 4 | 4 | 0.0000266313 |
| Magnolia biondii | Chr02 | 1 | CH_mbi_239 | 7 | 40 | 0.0000036583 |
| Magnolia biondii | Chr07 | 1 | CH_mbi_252 | 4 | 4 | 0.00000574001 |
| Magnolia biondii | Chr02 | 1 | CH_mbi_378 | 7 | 62 | 0.0000905063 |
| Magnolia biondii | Chr18 | 1 | CH_mbi_546 | 4 | 8 | 0.00039744 |
| Malus domestica | Chr06 | 1 | CH_mdo_358 | 4 | 4 | 0.0000199183 |
| Marchantia polymorpha | scaffold_31 | 1 | CH_mpo_51 | 4 | 5 | 0.00000464468 |
| Medicago truncatula | chr2 | 1 | CH_mtr_209 | 7 | 15 | 0.00000000390874 |
| Medicago truncatula | chr4 | 1 | CH_mtr_646 | 4 | 6 | 0.000166661 |
| Nelumbo nucifera | chr2 | 1 | CH_nnu_305 | 4 | 6 | 0.000105136 |
| Olea europaea | chr1 | 1 | CH_oeu_43 | 7 | 12 | 0.00000000814327 |
| Prunus persica | Pp05 | 1 | CH_ppe_181 | 5 | 5 | 0.000000100417 |
| Pisum sativum | chr7LG7 | 1 | CH_psa_351 | 4 | 7 | 0.000378387 |
| Populus trichocarpa | Chr18 | 1 | CH_ptr_295 | 4 | 4 | 0.0000520595 |
| Populus trichocarpa | Chr06 | 1 | CH_ptr_407 | 4 | 5 | 0.000259008 |
| Rhododendron simsii | chr03 | 1 | CH_rsi_280 | 4 | 4 | 0.0000106688 |
| Striga asiatica | scaffold149 | 1 | CH_sas_33 | 7 | 35 | 0.00000596205 |
| Salvia bowleyana | GWHASIU00000008 | 1 | CH_sbo_24 | 12 | 31 | 1.1916e-17 |
| Salvia bowleyana | GWHASIU00000008 | 1 | CH_sbo_310 | 6 | 35 | 0.000105657 |
| Salix brachista | GWHAAZH00000018 | 1 | CH_sbr_117 | 5 | 5 | 0.000000356802 |
| Sechium edule | LG09 | 1 | CH_sed_160 | 5 | 7 | 0.0000172977 |
| Sequoiadendron giganteum | chr8 | 1 | CH_sgi_241 | 7 | 7 | 0.00000000000143529 |
| Sequoiadendron giganteum | chr1 | 1 | CH_sgi_275 | 7 | 8 | 0.0000000000114382 |
| Sequoiadendron giganteum | chr1 | 1 | CH_sgi_298 | 7 | 9 | 0.0000000000512742 |
| Sequoiadendron giganteum | chr8 | 1 | CH_sgi_624 | 9 | 74 | 0.00000232636 |
| Sequoiadendron giganteum | chr10 | 1 | CH_sgi_666 | 5 | 9 | 0.00000921634 |
| Sequoiadendron giganteum | chr6 | 1 | CH_sgi_70 | 12 | 13 | 2.7705e-23 |
| Sequoiadendron giganteum | chr7 | 1 | CH_sgi_989 | 4 | 5 | 0.0000834264 |
| Solanum pennellii | Spenn-ch01 | 1 | CH_spe_259 | 4 | 5 | 0.0000431628 |
| Solanum tuberosum | ST4.03ch01 | 1 | CH_stu_304 | 4 | 4 | 0.00000933882 |
| Zea mays | 4 | 1 | CH_zma_209 | 4 | 5 | 0.00023884 |
| Aquilegia oxysepala | CHR07 | 2 | CH_aox_99 | 6 | 17 | 0.00000224138 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.09 | 2 | CH_arhy_440 | 4 | 4 | 0.0000598623 |
| Brassica carinata | ChrB06 | 2 | CH_bca_1078 | 6 | 24 | 0.000759143 |
| Brassica carinata | ChrB07 | 2 | CH_bca_829 | 5 | 10 | 0.000240854 |
| Camellia sinensis var. sinensis | Chr2 | 2 | CH_camsi_575 | 5 | 12 | 0.0000648719 |
| Camellia sinensis var. sinensis | Chr6 | 2 | CH_camsi_584 | 4 | 5 | 0.0000932186 |
| Camellia sinensis var. sinensis | Chr1 | 2 | CH_camsi_759 | 6 | 33 | 0.000375418 |
| Coffea canephora | chr5 | 2 | CH_ccan_297 | 4 | 43 | 0.00031224 |
| Citrus clementina | scaffold_2 | 2 | CH_ccl_200 | 5 | 7 | 0.00000179831 |
| Chenopodium quinoa | C_Quinoa_Scaffold_3796 | 2 | CH_cqu_298 | 4 | 4 | 0.0000308674 |
| Chenopodium quinoa | C_Quinoa_Scaffold_3970 | 2 | CH_cqu_480 | 4 | 6 | 0.000459189 |
| Daucus carota | DCARv2_Chr5 | 2 | CH_dca_212 | 4 | 4 | 0.0000418178 |
| Daucus carota | DCARv2_Chr4 | 2 | CH_dca_213 | 4 | 4 | 0.0000418178 |
| Daucus carota | DCARv2_Chr5 | 2 | CH_dca_217 | 5 | 10 | 0.0000612992 |
| Daucus carota | DCARv2_Chr2 | 2 | CH_dca_327 | 4 | 5 | 0.000208085 |
| Durio zibethinus | NW_019167827.1 | 2 | CH_dzi_299 | 5 | 12 | 0.000340038 |
| Eucalyptus grandis | Chr05 | 2 | CH_egr_262 | 7 | 9 | 0.0000000000482113 |
| Eucalyptus grandis | Chr11 | 2 | CH_egr_604 | 4 | 4 | 0.0000150328 |
| Eucalyptus grandis | Chr05 | 2 | CH_egr_605 | 4 | 4 | 0.0000150328 |
| Erythranthe guttata | scaffold_13 | 2 | CH_egut_268 | 5 | 11 | 0.0000580314 |
| Helianthus annuus | HanXRQChr02 | 2 | CH_han_398 | 4 | 4 | 0.0000266313 |
| Magnolia biondii | Chr02 | 2 | CH_mbi_239 | 7 | 40 | 0.0000036583 |
| Magnolia biondii | Chr07 | 2 | CH_mbi_252 | 4 | 4 | 0.00000574001 |
| Magnolia biondii | Chr02 | 2 | CH_mbi_378 | 7 | 62 | 0.0000905063 |
| Magnolia biondii | Chr18 | 2 | CH_mbi_546 | 4 | 8 | 0.00039744 |
| Malus domestica | Chr06 | 2 | CH_mdo_358 | 4 | 4 | 0.0000199183 |
| Marchantia polymorpha | scaffold_31 | 2 | CH_mpo_51 | 4 | 5 | 0.00000464468 |
| Nelumbo nucifera | chr2 | 2 | CH_nnu_305 | 4 | 6 | 0.000105136 |
| Olea europaea | chr1 | 2 | CH_oeu_43 | 7 | 12 | 0.00000000814327 |
| Prunus persica | Pp05 | 2 | CH_ppe_181 | 5 | 5 | 0.000000100417 |
| Pisum sativum | chr7LG7 | 2 | CH_psa_351 | 4 | 7 | 0.000378387 |
| Populus trichocarpa | Chr18 | 2 | CH_ptr_295 | 4 | 4 | 0.0000520595 |
| Populus trichocarpa | Chr06 | 2 | CH_ptr_407 | 4 | 5 | 0.000259008 |
| Rhododendron simsii | chr03 | 2 | CH_rsi_280 | 4 | 4 | 0.0000106688 |
| Striga asiatica | scaffold149 | 2 | CH_sas_33 | 7 | 35 | 0.00000596205 |
| Salvia bowleyana | GWHASIU00000008 | 2 | CH_sbo_24 | 12 | 31 | 1.1916e-17 |
| Salvia bowleyana | GWHASIU00000008 | 2 | CH_sbo_310 | 6 | 35 | 0.000105657 |
| Salix brachista | GWHAAZH00000018 | 2 | CH_sbr_117 | 5 | 5 | 0.000000356802 |
| Sechium edule | LG09 | 2 | CH_sed_160 | 5 | 7 | 0.0000172977 |
| Sequoiadendron giganteum | chr8 | 2 | CH_sgi_241 | 7 | 7 | 0.00000000000143529 |
| Sequoiadendron giganteum | chr1 | 2 | CH_sgi_275 | 7 | 8 | 0.0000000000114382 |
| Sequoiadendron giganteum | chr1 | 2 | CH_sgi_298 | 7 | 9 | 0.0000000000512742 |
| Sequoiadendron giganteum | chr8 | 2 | CH_sgi_624 | 9 | 74 | 0.00000232636 |
| Sequoiadendron giganteum | chr10 | 2 | CH_sgi_666 | 5 | 9 | 0.00000921634 |
| Sequoiadendron giganteum | chr6 | 2 | CH_sgi_70 | 12 | 13 | 2.7705e-23 |
| Sequoiadendron giganteum | chr7 | 2 | CH_sgi_989 | 4 | 5 | 0.0000834264 |
| Solanum pennellii | Spenn-ch01 | 2 | CH_spe_259 | 4 | 5 | 0.0000431628 |
| Solanum tuberosum | ST4.03ch01 | 2 | CH_stu_304 | 4 | 4 | 0.00000933882 |
| Zea mays | 4 | 2 | CH_zma_209 | 4 | 5 | 0.00023884 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |