Functional clusters

Information

  • Type MapMan
  • Description RNA biosynthesis.transcriptional regulation.C2C2 transcription factor superfamily.GATA trancription factor families.transcription factor (C-GATA)

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Acer truncatum chr13 1 CH_acertr_487 2 2 0.000422982
Aquilegia oxysepala CHR05 1 CH_aox_78 3 3 0.000000192964
Capsicum annuum PGAv.1.6.scaffold504 1 CH_can_393 2 2 0.000495663
Capsicum annuum PGAv.1.6.scaffold193 1 CH_can_394 2 2 0.000495663
Cicer arietinum L. Ca_LG5_v3 1 CH_car_306 2 2 0.000778301
Corylus avellana 9 1 CH_cav_413 2 2 0.000460017
Coffea canephora chr10 1 CH_ccan_316 2 6 0.000425883
Citrus clementina scaffold_5 1 CH_ccl_441 2 2 0.000492187
Citrullus lanatus CG_Chr08 1 CH_cla_198 2 2 0.000532269
Cucumis melo chr03 1 CH_cme_272 2 2 0.000400267
Cucumis sativus L. chr2 1 CH_csa_295 2 2 0.000500856
Fragaria x ananassa Fvb5-4 1 CH_fan_586 2 2 0.00066613
Fragaria x ananassa Fvb5-2 1 CH_fan_587 2 2 0.00066613
Fragaria vesca Fvb5 1 CH_fve_337 2 2 0.00017673
Lupinus albus Lalb_Chr23 1 CH_lal_403 2 2 0.000787236
Malus domestica Chr15 1 CH_mdo_735 2 2 0.000796344
Malus domestica Chr08 1 CH_mdo_736 2 2 0.000796344
Nelumbo nucifera chr5 1 CH_nnu_398 2 2 0.000436015
Nelumbo nucifera chr1 1 CH_nnu_399 2 2 0.000436015
Petunia axillaris Peaxi162Scf00454 1 CH_pax_348 2 2 0.000703556
Punica granatum NC_045127.1 1 CH_pgr_318 2 2 0.000450214
Punica granatum NC_045130.1 1 CH_pgr_319 2 2 0.000450214
Prunus persica Pp01 1 CH_ppe_503 2 2 0.000745962
Prunus persica Pp08 1 CH_ppe_504 2 2 0.000745962
Rosa chinensis RcHm_v2.0_Chr7 1 CH_rch_575 2 2 0.000119596
Solanum lycopersicum SL4.0ch01 1 CH_sly_462 2 2 0.000352164
Solanum pennellii Spenn-ch01 1 CH_spe_422 2 2 0.000266874
Solanum tuberosum ST4.03ch01 1 CH_stu_546 2 3 0.000461188
Theobroma cacao Chromosome_2 1 CH_tca_430 2 2 0.000732386
Theobroma cacao Chromosome_8 1 CH_tca_431 2 2 0.000732386
Tarenaya hassleriana NW_010968608.1 1 CH_tha_171 2 2 0.000419082
Tripterygium wilfordii NC_052242.1 1 CH_twi_279 2 2 0.000557507
Vigna mungo CM024072.1 1 CH_vmu_420 2 2 0.000969211
Vitis vinifera chr18 1 CH_vvi_430 2 2 0.00076063
Acer truncatum chr13 2 CH_acertr_487 2 2 0.000422982
Aquilegia oxysepala CHR05 2 CH_aox_78 3 3 0.000000192964
Capsicum annuum PGAv.1.6.scaffold504 2 CH_can_393 2 2 0.000495663
Capsicum annuum PGAv.1.6.scaffold193 2 CH_can_394 2 2 0.000495663
Cicer arietinum L. Ca_LG5_v3 2 CH_car_306 2 2 0.000778301
Corylus avellana 9 2 CH_cav_413 2 2 0.000460017
Coffea canephora chr10 2 CH_ccan_316 2 6 0.000425883
Citrus clementina scaffold_5 2 CH_ccl_441 2 2 0.000492187
Citrullus lanatus CG_Chr08 2 CH_cla_198 2 2 0.000532269
Cucumis melo chr03 2 CH_cme_272 2 2 0.000400267
Cucumis sativus L. chr2 2 CH_csa_295 2 2 0.000500856
Fragaria x ananassa Fvb5-4 2 CH_fan_586 2 2 0.00066613
Fragaria x ananassa Fvb5-2 2 CH_fan_587 2 2 0.00066613
Fragaria vesca Fvb5 2 CH_fve_337 2 2 0.00017673
Lupinus albus Lalb_Chr23 2 CH_lal_403 2 2 0.000787236
Lotus japonicus chr1 2 CH_lja_404 2 2 0.000715077
Malus domestica Chr15 2 CH_mdo_735 2 2 0.000796344
Malus domestica Chr08 2 CH_mdo_736 2 2 0.000796344
Nelumbo nucifera chr5 2 CH_nnu_398 2 2 0.000436015
Nelumbo nucifera chr1 2 CH_nnu_399 2 2 0.000436015
Petunia axillaris Peaxi162Scf00454 2 CH_pax_348 2 2 0.000703556
Punica granatum NC_045127.1 2 CH_pgr_318 2 2 0.000450214
Punica granatum NC_045130.1 2 CH_pgr_319 2 2 0.000450214
Prunus persica Pp01 2 CH_ppe_503 2 2 0.000745962
Prunus persica Pp08 2 CH_ppe_504 2 2 0.000745962
Rosa chinensis RcHm_v2.0_Chr7 2 CH_rch_575 2 2 0.000119596
Solanum lycopersicum SL4.0ch01 2 CH_sly_462 2 2 0.000352164
Solanum pennellii Spenn-ch01 2 CH_spe_422 2 2 0.000266874
Solanum tuberosum ST4.03ch01 2 CH_stu_546 2 3 0.000461188
Theobroma cacao Chromosome_2 2 CH_tca_430 2 2 0.000732386
Theobroma cacao Chromosome_8 2 CH_tca_431 2 2 0.000732386
Tarenaya hassleriana NW_010968608.1 2 CH_tha_171 2 2 0.000419082
Tripterygium wilfordii NC_052242.1 2 CH_twi_279 2 2 0.000557507
Vigna mungo CM024072.1 2 CH_vmu_420 2 2 0.000969211
Vitis vinifera chr18 2 CH_vvi_430 2 2 0.00076063

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001