Functional clusters

Information

  • Type MapMan
  • Description RNA biosynthesis.transcriptional regulation.transcription factor (GRAS)

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Anthoceros agrestis Sc2ySwM_228 1 CH_aag_39 6 66 0.00000115679
Acer truncatum chr5 1 CH_acertr_457 3 4 0.000394494
Actinidia chinensis Lachesis_group3 1 CH_ach_205 3 3 0.000336737
Actinidia chinensis Lachesis_group13 1 CH_ach_69 4 6 0.0000102562
Amaranthus hybridus AmaHy_arrow1_Scaffold_15 1 CH_amhyb_176 3 4 0.000190926
Amaranthus hybridus AmaHy_arrow1_Scaffold_8 1 CH_amhyb_54 4 6 0.000000842984
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.08 1 CH_arhy_207 4 4 0.0000000479541
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.03 1 CH_arhy_437 3 3 0.0000533905
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.18 1 CH_arhy_535 3 4 0.000213415
Amborella trichopoda AmTr_v1.0_scaffold00045 1 CH_atr_54 5 6 0.00000000134173
Brassica carinata ChrB07 1 CH_bca_249 4 4 0.000000129565
Beta vulgaris Chr7_EL10_PGA_scaffold5 1 CH_bvu_36 5 5 0.0000000000231852
Camellia sinensis var. sinensis Chr11 1 CH_camsi_94 6 7 0.00000000000542945
Camellia sinensis var. sinensis Chr4 1 CH_camsi_95 8 28 0.00000000000546332
Cannabis sativa NC_044375.1 1 CH_cansat_38 7 12 0.000000000000190639
Cicer arietinum L. Ca_LG6_v3 1 CH_car_14 5 5 0.000000000377322
Corylus avellana 6 1 CH_cav_21 7 8 0.0000000000000436009
Citrus clementina scaffold_8 1 CH_ccl_152 4 4 0.000000246764
Carpinus fangiana Cfa06 1 CH_cfa_374 3 5 0.00072433
Carya illinoinensis Chr13 1 CH_cil_152 5 5 0.000000000604701
Carica papaya supercontig_81 1 CH_cpa_21 5 5 0.000000000352798
Chenopodium quinoa C_Quinoa_Scaffold_2493 1 CH_cqu_40 7 9 0.00000000000000493708
Chenopodium quinoa C_Quinoa_Scaffold_2716 1 CH_cqu_51 6 7 0.000000000000862891
Davidia involucrata GWHABJS00000007 1 CH_din_22 8 12 0.00000000000000939441
Davidia involucrata GWHABJS00000085 1 CH_din_69 5 5 0.00000000206249
Davidia involucrata GWHABJS00000085 1 CH_din_70 5 5 0.00000000206249
Durio zibethinus NW_019167882.1 1 CH_dzi_157 4 5 0.00000474686
Durio zibethinus NW_019168159.1 1 CH_dzi_158 4 5 0.00000474686
Durio zibethinus NW_019168026.1 1 CH_dzi_250 4 10 0.000197669
Erigeron canadensis Conyza_canadensis_scaffold:7 1 CH_eca_144 4 4 0.000000151216
Erigeron canadensis Conyza_canadensis_scaffold:7 1 CH_eca_210 4 7 0.00000527568
Eucalyptus grandis Chr02 1 CH_egr_16 16 20 5.15783e-35
Eucalyptus grandis Chr11 1 CH_egr_190 7 8 0.000000000000104973
Erythranthe guttata scaffold_4 1 CH_egut_404 3 4 0.000338762
Fragaria x ananassa Fvb3-1 1 CH_fan_11 8 9 6.41359e-17
Fragaria x ananassa Fvb3-2 1 CH_fan_34 7 10 0.000000000000514844
Fragaria x ananassa Fvb3-3 1 CH_fan_5 11 17 9.8717e-22
Fragaria x ananassa Fvb3-4 1 CH_fan_8 8 8 7.13673e-18
Fragaria vesca Fvb3 1 CH_fve_3 16 32 2.85065e-33
Gossypium hirsutum D02 1 CH_ghi_252 5 8 0.000000148395
Glycine max Gm13 1 CH_gma_128 5 6 0.0000000119509
Glycine max Gm15 1 CH_gma_209 4 4 0.000000982498
Glycine max Gm12 1 CH_gma_251 4 5 0.00000490442
Glycine max Gm11 1 CH_gma_56 6 6 0.00000000000401396
Gossypium raimondii Chr05 1 CH_gra_112 6 15 0.0000000147587
Gossypium raimondii Chr03 1 CH_gra_381 3 3 0.000354214
Helianthus annuus HanXRQChr05 1 CH_han_628 3 3 0.000373288
Helianthus annuus HanXRQChr08 1 CH_han_629 3 3 0.000373288
Hydrangea macrophylla Hma1.2p1_0615F.1 1 CH_hma_99 3 3 0.0000481294
Lotus japonicus chr3 1 CH_lja_32 7 8 0.0000000000000252976
Lonicera japonica GWHAAZE00000001 1 CH_lonja_507 3 3 0.00026962
Lactuca sativa Lsat_1_v8_lg_9 1 CH_lsa_207 4 4 0.000000419168
Lactuca sativa Lsat_1_v8_lg_9 1 CH_lsa_247 4 5 0.00000209285
Malus domestica Chr03 1 CH_mdo_109 6 10 0.000000000173317
Malus domestica Chr11 1 CH_mdo_75 7 13 0.00000000000214263
Malus domestica Chr12 1 CH_mdo_764 3 4 0.000881956
Manihot esculenta Chromosome02 1 CH_mes_200 4 4 0.00000102639
Manihot esculenta Chromosome01 1 CH_mes_201 4 4 0.00000102639
Manihot esculenta Chromosome15 1 CH_mes_312 4 8 0.0000713136
Medicago truncatula chr4 1 CH_mtr_205 5 7 0.00000000314867
Medicago truncatula chr2 1 CH_mtr_54 8 12 1.18915e-16
Oryza sativa ssp. japonica chr11 1 CH_osa_233 3 3 0.0000820027
Oryza sativa ssp. japonica chr12 1 CH_osa_234 3 3 0.0000820027
Punica granatum NC_045129.1 1 CH_pgr_245 3 3 0.000128208
Prunus persica Pp06 1 CH_ppe_38 8 8 1.0573e-18
Pisum sativum chr5LG3 1 CH_psa_197 3 3 0.0000403267
Pisum sativum chr7LG7 1 CH_psa_90 4 4 0.0000000389183
Papaver somniferum NC_039362.1 1 CH_pso_293 4 7 0.000000625122
Papaver somniferum NC_039364.1 1 CH_pso_322 4 9 0.00000224808
Papaver somniferum NC_039364.1 1 CH_pso_557 3 5 0.000273594
Populus trichocarpa Chr01 1 CH_ptr_126 5 5 0.00000000291581
Populus trichocarpa Chr09 1 CH_ptr_152 5 6 0.0000000174602
Phaseolus vulgaris Chr11 1 CH_pvu_162 4 4 0.000000376339
Phaseolus vulgaris scaffold_15 1 CH_pvu_327 3 3 0.000200854
Quercus lobata 4 1 CH_qlo_425 4 4 0.000000187917
Quercus lobata 1 1 CH_qlo_43 10 12 7.64908e-23
Quercus lobata 4 1 CH_qlo_739 3 3 0.000129985
Quercus lobata 8 1 CH_qlo_740 3 3 0.000129985
Rosa chinensis RcHm_v2.0_Chr5 1 CH_rch_3 19 36 3.56856e-43
Rhododendron simsii chr13 1 CH_rsi_5 14 14 6.3503e-36
Striga asiatica scaffold203 1 CH_sas_80 3 5 0.00018218
Striga asiatica scaffold35 1 CH_sas_81 3 4 0.00018218
Salix brachista GWHAAZH00000016 1 CH_sbr_240 4 8 0.0000669235
Salix brachista GWHAAZH00000016 1 CH_sbr_53 6 7 0.0000000000341549
Salix brachista GWHAAZH00000009 1 CH_sbr_76 5 5 0.0000000021851
Simmondsia chinensis GWHAASQ00000021 1 CH_sci_126 3 3 0.0000650722
Simmondsia chinensis GWHAASQ00000012 1 CH_sci_54 4 4 0.0000000858837
Selaginella moellendorffii scaffold_5 1 CH_smo_15 8 16 0.00000000000021914
Selaginella moellendorffii scaffold_33 1 CH_smo_18 7 12 0.00000000000631364
Trochodendron aralioides group7 1 CH_tar_391 3 3 0.000214708
Theobroma cacao Chromosome_9 1 CH_tca_105 5 6 0.00000000177283
Trifolium pratense Tp57577_TGAC_v2_LG4 1 CH_tpr_108 4 4 0.000000253228
Trifolium pratense Tp57577_TGAC_v2_LG3 1 CH_tpr_18 6 6 0.000000000000686513
Tripterygium wilfordii NC_052238.1 1 CH_twi_111 4 4 0.00000132841
Tripterygium wilfordii NC_052232.1 1 CH_twi_13 9 10 9.33099e-19
Tripterygium wilfordii NC_052233.1 1 CH_twi_272 3 3 0.000547731
Utricularia gibba unitig_37 1 CH_ugi_193 3 3 0.000149136
Vaccinium macrocarpon chr9_Vaccinium_macrocarpon_Stevens_v1 1 CH_vma_1 10 10 1.94805e-26
Vigna mungo CM024079.1 1 CH_vmu_250 3 3 0.000146709
Vigna mungo CM024076.1 1 CH_vmu_251 3 3 0.000146709
Vanilla planifolia CM028161.1 1 CH_vpl_100 6 34 0.00000689894
Vitis vinifera chr13 1 CH_vvi_154 4 4 0.000000133712
Vitis vinifera chr6 1 CH_vvi_182 4 5 0.000000667784
Zea mays 4 1 CH_zma_43 5 5 0.00000000148863
Anthoceros agrestis Sc2ySwM_228 2 CH_aag_39 6 66 0.00000115679
Acer truncatum chr5 2 CH_acertr_457 3 4 0.000394494
Actinidia chinensis Lachesis_group3 2 CH_ach_205 3 3 0.000336737
Actinidia chinensis Lachesis_group13 2 CH_ach_69 4 6 0.0000102562
Amaranthus hybridus AmaHy_arrow1_Scaffold_15 2 CH_amhyb_176 3 4 0.000190926
Amaranthus hybridus AmaHy_arrow1_Scaffold_8 2 CH_amhyb_54 4 6 0.000000842984
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.08 2 CH_arhy_207 4 4 0.0000000479541
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.03 2 CH_arhy_437 3 3 0.0000533905
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.18 2 CH_arhy_535 3 4 0.000213415
Amborella trichopoda AmTr_v1.0_scaffold00045 2 CH_atr_54 5 6 0.00000000134173
Brassica carinata ChrB07 2 CH_bca_249 4 4 0.000000129565
Beta vulgaris Chr7_EL10_PGA_scaffold5 2 CH_bvu_36 5 5 0.0000000000231852
Camellia sinensis var. sinensis Chr11 2 CH_camsi_94 6 7 0.00000000000542945
Camellia sinensis var. sinensis Chr4 2 CH_camsi_95 8 28 0.00000000000546332
Cannabis sativa NC_044375.1 2 CH_cansat_38 7 12 0.000000000000190639
Cicer arietinum L. Ca_LG6_v3 2 CH_car_14 5 5 0.000000000377322
Corylus avellana 6 2 CH_cav_21 7 8 0.0000000000000436009
Citrus clementina scaffold_8 2 CH_ccl_152 4 4 0.000000246764
Carpinus fangiana Cfa06 2 CH_cfa_374 3 5 0.00072433
Carya illinoinensis Chr13 2 CH_cil_152 5 5 0.000000000604701
Carica papaya supercontig_81 2 CH_cpa_21 5 5 0.000000000352798
Chenopodium quinoa C_Quinoa_Scaffold_2493 2 CH_cqu_40 7 9 0.00000000000000493708
Chenopodium quinoa C_Quinoa_Scaffold_2716 2 CH_cqu_51 6 7 0.000000000000862891
Davidia involucrata GWHABJS00000007 2 CH_din_22 8 12 0.00000000000000939441
Davidia involucrata GWHABJS00000085 2 CH_din_69 5 5 0.00000000206249
Davidia involucrata GWHABJS00000085 2 CH_din_70 5 5 0.00000000206249
Durio zibethinus NW_019167882.1 2 CH_dzi_157 4 5 0.00000474686
Durio zibethinus NW_019168159.1 2 CH_dzi_158 4 5 0.00000474686
Durio zibethinus NW_019168026.1 2 CH_dzi_250 4 10 0.000197669
Erigeron canadensis Conyza_canadensis_scaffold:7 2 CH_eca_144 4 4 0.000000151216
Erigeron canadensis Conyza_canadensis_scaffold:7 2 CH_eca_210 4 7 0.00000527568
Eucalyptus grandis Chr02 2 CH_egr_16 16 20 5.15783e-35
Eucalyptus grandis Chr11 2 CH_egr_190 7 8 0.000000000000104973
Eucalyptus grandis Chr10 2 CH_egr_327 5 5 0.00000000255558
Eucalyptus grandis Chr01 2 CH_egr_551 5 13 0.00000323855
Eucalyptus grandis Chr07 2 CH_egr_867 3 3 0.000472116
Erythranthe guttata scaffold_4 2 CH_egut_404 3 4 0.000338762
Fragaria x ananassa Fvb3-1 2 CH_fan_11 8 9 6.41359e-17
Fragaria x ananassa Fvb3-2 2 CH_fan_34 7 10 0.000000000000514844
Fragaria x ananassa Fvb3-3 2 CH_fan_5 11 17 9.8717e-22
Fragaria x ananassa Fvb3-4 2 CH_fan_8 8 8 7.13673e-18
Fragaria vesca Fvb3 2 CH_fve_3 16 32 2.85065e-33
Gossypium hirsutum D02 2 CH_ghi_252 5 8 0.000000148395
Gossypium hirsutum A02 2 CH_ghi_636 4 10 0.000274728
Gossypium hirsutum A03 2 CH_ghi_794 3 3 0.000650973
Gossypium hirsutum D03 2 CH_ghi_795 3 3 0.000650973
Glycine max Gm13 2 CH_gma_128 5 6 0.0000000119509
Glycine max Gm15 2 CH_gma_209 4 4 0.000000982498
Glycine max Gm12 2 CH_gma_251 4 5 0.00000490442
Glycine max Gm11 2 CH_gma_56 6 6 0.00000000000401396
Gossypium raimondii Chr05 2 CH_gra_112 6 15 0.0000000147587
Gossypium raimondii Chr03 2 CH_gra_381 3 3 0.000354214
Helianthus annuus HanXRQChr05 2 CH_han_628 3 3 0.000373288
Helianthus annuus HanXRQChr08 2 CH_han_629 3 3 0.000373288
Hydrangea macrophylla Hma1.2p1_0615F.1 2 CH_hma_99 3 3 0.0000481294
Lotus japonicus chr3 2 CH_lja_32 7 8 0.0000000000000252976
Lonicera japonica GWHAAZE00000001 2 CH_lonja_507 3 3 0.00026962
Lactuca sativa Lsat_1_v8_lg_9 2 CH_lsa_207 4 4 0.000000419168
Lactuca sativa Lsat_1_v8_lg_9 2 CH_lsa_247 4 5 0.00000209285
Malus domestica Chr03 2 CH_mdo_109 6 10 0.000000000173317
Malus domestica Chr11 2 CH_mdo_75 7 13 0.00000000000214263
Malus domestica Chr12 2 CH_mdo_764 3 4 0.000881956
Manihot esculenta Chromosome02 2 CH_mes_200 4 4 0.00000102639
Manihot esculenta Chromosome01 2 CH_mes_201 4 4 0.00000102639
Manihot esculenta Chromosome15 2 CH_mes_312 4 8 0.0000713136
Oryza sativa ssp. japonica chr11 2 CH_osa_233 3 3 0.0000820027
Oryza sativa ssp. japonica chr12 2 CH_osa_234 3 3 0.0000820027
Punica granatum NC_045129.1 2 CH_pgr_245 3 3 0.000128208
Prunus persica Pp06 2 CH_ppe_38 8 8 1.0573e-18
Pisum sativum chr5LG3 2 CH_psa_197 3 3 0.0000403267
Pisum sativum chr7LG7 2 CH_psa_90 4 4 0.0000000389183
Papaver somniferum NC_039362.1 2 CH_pso_293 4 7 0.000000625122
Papaver somniferum NC_039364.1 2 CH_pso_322 4 9 0.00000224808
Papaver somniferum NC_039364.1 2 CH_pso_557 3 5 0.000273594
Populus trichocarpa Chr01 2 CH_ptr_126 5 5 0.00000000291581
Populus trichocarpa Chr09 2 CH_ptr_152 5 6 0.0000000174602
Phaseolus vulgaris Chr11 2 CH_pvu_162 4 4 0.000000376339
Phaseolus vulgaris scaffold_15 2 CH_pvu_327 3 3 0.000200854
Quercus lobata 4 2 CH_qlo_425 4 4 0.000000187917
Quercus lobata 1 2 CH_qlo_43 10 12 7.64908e-23
Quercus lobata 4 2 CH_qlo_739 3 3 0.000129985
Quercus lobata 8 2 CH_qlo_740 3 3 0.000129985
Rosa chinensis RcHm_v2.0_Chr5 2 CH_rch_3 19 36 3.56856e-43
Rhododendron simsii chr13 2 CH_rsi_5 14 14 6.3503e-36
Striga asiatica scaffold203 2 CH_sas_80 3 5 0.00018218
Striga asiatica scaffold35 2 CH_sas_81 3 4 0.00018218
Salix brachista GWHAAZH00000016 2 CH_sbr_240 4 8 0.0000669235
Salix brachista GWHAAZH00000016 2 CH_sbr_53 6 7 0.0000000000341549
Salix brachista GWHAAZH00000009 2 CH_sbr_76 5 5 0.0000000021851
Simmondsia chinensis GWHAASQ00000021 2 CH_sci_126 3 3 0.0000650722
Simmondsia chinensis GWHAASQ00000012 2 CH_sci_54 4 4 0.0000000858837
Selaginella moellendorffii scaffold_5 2 CH_smo_15 8 16 0.00000000000021914
Selaginella moellendorffii scaffold_33 2 CH_smo_18 7 12 0.00000000000631364
Trochodendron aralioides group7 2 CH_tar_391 3 3 0.000214708
Theobroma cacao Chromosome_9 2 CH_tca_105 5 6 0.00000000177283
Trifolium pratense Tp57577_TGAC_v2_LG4 2 CH_tpr_108 4 4 0.000000253228
Trifolium pratense Tp57577_TGAC_v2_LG3 2 CH_tpr_18 6 6 0.000000000000686513
Tripterygium wilfordii NC_052238.1 2 CH_twi_111 4 4 0.00000132841
Tripterygium wilfordii NC_052232.1 2 CH_twi_13 9 10 9.33099e-19
Tripterygium wilfordii NC_052233.1 2 CH_twi_272 3 3 0.000547731
Utricularia gibba unitig_37 2 CH_ugi_193 3 3 0.000149136
Vaccinium macrocarpon chr9_Vaccinium_macrocarpon_Stevens_v1 2 CH_vma_1 10 10 1.94805e-26
Vigna mungo CM024079.1 2 CH_vmu_250 3 3 0.000146709
Vigna mungo CM024076.1 2 CH_vmu_251 3 3 0.000146709
Vanilla planifolia CM028161.1 2 CH_vpl_100 6 34 0.00000689894
Vitis vinifera chr13 2 CH_vvi_154 4 4 0.000000133712
Vitis vinifera chr6 2 CH_vvi_182 4 5 0.000000667784
Zea mays 4 2 CH_zma_43 5 5 0.00000000148863

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001