Functional clusters
Information
- Type MapMan
- Description RNA biosynthesis.transcriptional regulation.bZIP transcription factor superfamily
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Actinidia chinensis | Lachesis_group24 | 1 | CH_ach_252 | 3 | 3 | 0.000652616 |
| Sequoiadendron giganteum | chr2 | 1 | CH_sgi_685 | 3 | 3 | 0.0000194225 |
| Actinidia chinensis | Lachesis_group24 | 2 | CH_ach_252 | 3 | 3 | 0.000652616 |
| Sequoiadendron giganteum | chr2 | 2 | CH_sgi_685 | 3 | 3 | 0.0000194225 |
Available child term results
| Ontology identifier | Description | Number of clusters |
|---|---|---|
| 15.5.4.1 | RNA biosynthesis.transcriptional regulation.bZIP transcription factor superfamily.transcription factor (bZIP) | 15 |
| 15.5.4.2 | RNA biosynthesis.transcriptional regulation.bZIP transcription factor superfamily.transcription factor (DOG) | 57 |
| 15.5.4.3 | RNA biosynthesis.transcriptional regulation.bZIP transcription factor superfamily.transcription factor (HY5) | 4 |
| 15.5.4.4.1 | RNA biosynthesis.transcriptional regulation.bZIP transcription factor superfamily.TGA transcription factor activity.transcription factor (TGA) | 2 |
| 15.5.4.4.2 | RNA biosynthesis.transcriptional regulation.bZIP transcription factor superfamily.TGA transcription factor activity.transcriptional co-activator (BOP) | 4 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |