Functional clusters
Information
- Type MapMan
- Description RNA biosynthesis.transcriptional regulation.transcription factor (TIFY)
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Brassica carinata | ChrC07 | 1 | CH_bca_953 | 3 | 7 | 0.000498807 |
| Camellia sinensis var. sinensis | Chr12 | 1 | CH_camsi_985 | 2 | 2 | 0.000962949 |
| Helianthus annuus | HanXRQChr12 | 1 | CH_han_190 | 4 | 5 | 0.00000000766261 |
| Magnolia biondii | Chr02 | 1 | CH_mbi_254 | 3 | 5 | 0.00000583585 |
| Simmondsia chinensis | GWHAASQ00000005 | 1 | CH_sci_72 | 3 | 3 | 0.000000380603 |
| Sequoiadendron giganteum | chr2 | 1 | CH_sgi_154 | 6 | 7 | 0.00000000000000117236 |
| Sequoiadendron giganteum | chr4 | 1 | CH_sgi_520 | 4 | 8 | 0.0000000939889 |
| Solanum lycopersicum | SL4.0ch08 | 1 | CH_sly_215 | 3 | 3 | 0.00000188102 |
| Solanum pennellii | Spenn-ch08 | 1 | CH_spe_202 | 4 | 25 | 0.00000332901 |
| Solanum tuberosum | ST4.03ch08 | 1 | CH_stu_187 | 4 | 14 | 0.000000288365 |
| Vitis vinifera | chr10 | 1 | CH_vvi_98 | 4 | 4 | 0.000000000944054 |
| Zea mays | 1 | 1 | CH_zma_119 | 3 | 3 | 0.00000694535 |
| Zea mays | 1 | 1 | CH_zma_135 | 3 | 4 | 0.00002777 |
| Zea mays | 5 | 1 | CH_zma_167 | 3 | 5 | 0.0000693967 |
| Brassica carinata | ChrC07 | 2 | CH_bca_953 | 3 | 7 | 0.000498807 |
| Camellia sinensis var. sinensis | Chr12 | 2 | CH_camsi_985 | 2 | 2 | 0.000962949 |
| Helianthus annuus | HanXRQChr12 | 2 | CH_han_190 | 4 | 5 | 0.00000000766261 |
| Magnolia biondii | Chr02 | 2 | CH_mbi_254 | 3 | 5 | 0.00000583585 |
| Simmondsia chinensis | GWHAASQ00000005 | 2 | CH_sci_72 | 3 | 3 | 0.000000380603 |
| Sequoiadendron giganteum | chr2 | 2 | CH_sgi_154 | 6 | 7 | 0.00000000000000117236 |
| Sequoiadendron giganteum | chr4 | 2 | CH_sgi_520 | 4 | 8 | 0.0000000939889 |
| Solanum lycopersicum | SL4.0ch08 | 2 | CH_sly_215 | 3 | 3 | 0.00000188102 |
| Solanum pennellii | Spenn-ch08 | 2 | CH_spe_202 | 4 | 25 | 0.00000332901 |
| Solanum tuberosum | ST4.03ch08 | 2 | CH_stu_187 | 4 | 14 | 0.000000288365 |
| Vitis vinifera | chr10 | 2 | CH_vvi_98 | 4 | 4 | 0.000000000944054 |
| Zea mays | 1 | 2 | CH_zma_119 | 3 | 3 | 0.00000694535 |
| Zea mays | 1 | 2 | CH_zma_135 | 3 | 4 | 0.00002777 |
| Zea mays | 5 | 2 | CH_zma_167 | 3 | 5 | 0.0000693967 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |