Functional clusters

Information

  • Type Gene Ontology
  • Description regulation of biological process

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Arabidopsis thaliana Chr5 3 CH_ath_303 27 76 0.0000128745
Cicer arietinum L. Ca_LG3_v3 3 CH_car_169 23 46 0.00031137
Erigeron canadensis Conyza_canadensis_scaffold:3 3 CH_eca_405 17 35 0.000417917
Eucalyptus grandis Chr03 3 CH_egr_474 30 55 0.000000290201
Rhododendron simsii chr09 3 CH_rsi_328 14 18 0.0000410157
Solanum pennellii Spenn-ch12 3 CH_spe_445 24 68 0.000682991
Solanum tuberosum ST4.03ch07 3 CH_stu_606 22 44 0.000678644
Selenicereus undatus Scaffold_33673 3 CH_sun_109 29 80 0.0000809394
Arabidopsis thaliana Chr5 4 CH_ath_303 27 76 0.0000128745
Cicer arietinum L. Ca_LG3_v3 4 CH_car_169 23 46 0.00031137
Erigeron canadensis Conyza_canadensis_scaffold:3 4 CH_eca_405 17 35 0.000417917
Eucalyptus grandis Chr03 4 CH_egr_474 30 55 0.000000290201
Rhododendron simsii chr09 4 CH_rsi_328 14 18 0.0000410157
Solanum pennellii Spenn-ch12 4 CH_spe_445 24 68 0.000682991
Solanum tuberosum ST4.03ch07 4 CH_stu_606 22 44 0.000678644
Selenicereus undatus Scaffold_33673 4 CH_sun_109 29 80 0.0000809394

Available child term results

Ontology identifier Description Number of clusters
GO:0000079 regulation of cyclin-dependent protein serine/threonine kinase activity 14
GO:0000122 negative regulation of transcription by RNA polymerase II 14
GO:0000160 phosphorelay signal transduction system 24
GO:0000183 rDNA heterochromatin assembly 16
GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay 18
GO:0000288 nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay 2
GO:0000289 nuclear-transcribed mRNA poly(A) tail shortening 8
GO:0000290 deadenylation-dependent decapping of nuclear-transcribed mRNA 10
GO:0000381 regulation of alternative mRNA splicing, via spliceosome 4
GO:0001558 regulation of cell growth 6
GO:0002220 innate immune response activating cell surface receptor signaling pathway 16
GO:0002221 pattern recognition receptor signaling pathway 6
GO:0002230 positive regulation of defense response to virus by host 40
GO:0002253 activation of immune response 8
GO:0002684 positive regulation of immune system process 2
GO:0002752 cell surface pattern recognition receptor signaling pathway 4
GO:0002758 innate immune response-activating signal transduction 30
GO:0002831 regulation of response to biotic stimulus 2
GO:0003352 regulation of cilium movement 2
GO:0006109 regulation of carbohydrate metabolic process 4
GO:0006110 regulation of glycolytic process 2
GO:0006275 regulation of DNA replication 8
GO:0006282 regulation of DNA repair 2
GO:0006342 chromatin silencing 16
GO:0006346 DNA methylation-dependent heterochromatin assembly 6
GO:0006348 chromatin silencing at telomere 6
GO:0006355 regulation of transcription, DNA-templated 42
GO:0006357 regulation of transcription by RNA polymerase II 62
GO:0006417 regulation of translation 8
GO:0006792 regulation of sulfur utilization 26
GO:0006983 ER overload response 10
GO:0006990 positive regulation of transcription from RNA polymerase II promoter involved in unfolded protein response 6
GO:0007094 mitotic spindle assembly checkpoint signaling 8
GO:0007095 mitotic G2 DNA damage checkpoint signaling 8
GO:0007096 regulation of exit from mitosis 2
GO:0007165 signal transduction 16
GO:0007166 cell surface receptor signaling pathway 18
GO:0007178 transmembrane receptor protein serine/threonine kinase signaling pathway 12
GO:0007186 G protein-coupled receptor signaling pathway 20
GO:0007205 protein kinase C-activating G protein-coupled receptor signaling pathway 10
GO:0007219 Notch signaling pathway 4
GO:0007264 small GTPase mediated signal transduction 10
GO:0007346 regulation of mitotic cell cycle 14
GO:0008284 positive regulation of cell population proliferation 6
GO:0008285 negative regulation of cell population proliferation 12
GO:0009585 red, far-red light phototransduction 4
GO:0009616 RNAi-mediated antiviral immune response 4
GO:0009649 entrainment of circadian clock 2
GO:0009734 auxin-activated signaling pathway 74
GO:0009736 cytokinin-activated signaling pathway 16
GO:0009738 abscisic acid-activated signaling pathway 10
GO:0009740 gibberellic acid mediated signaling pathway 6
GO:0009742 brassinosteroid mediated signaling pathway 2
GO:0009745 sucrose mediated signaling 28
GO:0009747 hexokinase-dependent signaling 6
GO:0009755 hormone-mediated signaling pathway 2
GO:0009785 blue light signaling pathway 2
GO:0009786 regulation of asymmetric cell division 20
GO:0009787 regulation of abscisic acid-activated signaling pathway 12
GO:0009788 negative regulation of abscisic acid-activated signaling pathway 6
GO:0009789 positive regulation of abscisic acid-activated signaling pathway 2
GO:0009862 systemic acquired resistance, salicylic acid mediated signaling pathway 12
GO:0009863 salicylic acid mediated signaling pathway 4
GO:0009864 induced systemic resistance, jasmonic acid mediated signaling pathway 8
GO:0009866 induced systemic resistance, ethylene mediated signaling pathway 8
GO:0009868 jasmonic acid and ethylene-dependent systemic resistance, jasmonic acid mediated signaling pathway 8
GO:0009873 ethylene-activated signaling pathway 216
GO:0009889 regulation of biosynthetic process 6
GO:0009891 positive regulation of biosynthetic process 2
GO:0009894 regulation of catabolic process 2
GO:0009909 regulation of flower development 6
GO:0009910 negative regulation of flower development 10
GO:0009937 regulation of gibberellic acid mediated signaling pathway 8
GO:0009939 positive regulation of gibberellic acid mediated signaling pathway 2
GO:0009963 positive regulation of flavonoid biosynthetic process 6
GO:0009966 regulation of signal transduction 8
GO:0010018 far-red light signaling pathway 6
GO:0010029 regulation of seed germination 4
GO:0010030 positive regulation of seed germination 2
GO:0010063 positive regulation of trichoblast fate specification 2
GO:0010082 regulation of root meristem growth 2
GO:0010099 regulation of photomorphogenesis 4
GO:0010104 regulation of ethylene-activated signaling pathway 20
GO:0010105 negative regulation of ethylene-activated signaling pathway 12
GO:0010112 regulation of systemic acquired resistance 38
GO:0010115 regulation of abscisic acid biosynthetic process 12
GO:0010116 positive regulation of abscisic acid biosynthetic process 6
GO:0010119 regulation of stomatal movement 2
GO:0010155 regulation of proton transport 26
GO:0010186 positive regulation of cellular defense response 6
GO:0010187 negative regulation of seed germination 2
GO:0010205 photoinhibition 6
GO:0010221 negative regulation of vernalization response 8
GO:0010310 regulation of hydrogen peroxide metabolic process 2
GO:0010315 auxin efflux 16
GO:0010321 regulation of vegetative phase change 4
GO:0010337 regulation of salicylic acid metabolic process 16
GO:0010359 regulation of anion channel activity 22
GO:0010363 regulation of plant-type hypersensitive response 2
GO:0010364 regulation of ethylene biosynthetic process 4
GO:0010365 positive regulation of ethylene biosynthetic process 16
GO:0010366 negative regulation of ethylene biosynthetic process 4
GO:0010371 regulation of gibberellin biosynthetic process 32
GO:0010372 positive regulation of gibberellin biosynthetic process 2
GO:0010378 temperature compensation of the circadian clock 2
GO:0010422 regulation of brassinosteroid biosynthetic process 44
GO:0010455 positive regulation of cell fate commitment 2
GO:0010466 negative regulation of peptidase activity 14
GO:0010468 regulation of gene expression 18
GO:0010495 long-distance posttranscriptional gene silencing 2
GO:0010506 regulation of autophagy 4
GO:0010507 negative regulation of autophagy 2
GO:0010513 positive regulation of phosphatidylinositol biosynthetic process 2
GO:0010556 regulation of macromolecule biosynthetic process 2
GO:0010569 regulation of double-strand break repair via homologous recombination 8
GO:0010581 regulation of starch biosynthetic process 4
GO:0010601 positive regulation of auxin biosynthetic process 2
GO:0010604 positive regulation of macromolecule metabolic process 6
GO:0010606 positive regulation of cytoplasmic mRNA processing body assembly 16
GO:0010608 posttranscriptional regulation of gene expression 6
GO:0010628 positive regulation of gene expression 4
GO:0010629 negative regulation of gene expression 2
GO:0010646 regulation of cell communication 4
GO:0010726 positive regulation of hydrogen peroxide metabolic process 22
GO:0010728 regulation of hydrogen peroxide biosynthetic process 2
GO:0010729 positive regulation of hydrogen peroxide biosynthetic process 6
GO:0010730 negative regulation of hydrogen peroxide biosynthetic process 2
GO:0010767 regulation of transcription from RNA polymerase II promoter in response to UV-induced DNA damage 4
GO:0010845 positive regulation of reciprocal meiotic recombination 2
GO:0010896 regulation of triglyceride catabolic process 8
GO:0010922 positive regulation of phosphatase activity 12
GO:0010939 regulation of necrotic cell death 2
GO:0010941 regulation of cell death 2
GO:0010942 positive regulation of cell death 6
GO:0010951 negative regulation of endopeptidase activity 28
GO:0010964 regulation of heterochromatin assembly by small RNA 4
GO:0010968 regulation of microtubule nucleation 20
GO:0010971 positive regulation of G2/M transition of mitotic cell cycle 2
GO:0012502 induction of programmed cell death 2
GO:0016458 gene silencing 4
GO:0017183 peptidyl-diphthamide biosynthetic process from peptidyl-histidine 18
GO:0019218 regulation of steroid metabolic process 30
GO:0019222 regulation of metabolic process 6
GO:0019722 calcium-mediated signaling 6
GO:0022603 regulation of anatomical structure morphogenesis 4
GO:0030071 regulation of mitotic metaphase/anaphase transition 20
GO:0030422 production of siRNA involved in RNA interference 2
GO:0030656 regulation of vitamin metabolic process 2
GO:0030833 regulation of actin filament polymerization 10
GO:0030845 phospholipase C-inhibiting G protein-coupled receptor signaling pathway 84
GO:0030968 endoplasmic reticulum unfolded protein response 70
GO:0031047 gene silencing by RNA 4
GO:0031054 pre-miRNA processing 2
GO:0031087 deadenylation-independent decapping of nuclear-transcribed mRNA 30
GO:0031116 positive regulation of microtubule polymerization 4
GO:0031117 positive regulation of microtubule depolymerization 10
GO:0031323 regulation of cellular metabolic process 4
GO:0031324 negative regulation of cellular metabolic process 2
GO:0031325 positive regulation of cellular metabolic process 2
GO:0031328 positive regulation of cellular biosynthetic process 4
GO:0031348 negative regulation of defense response 22
GO:0031396 regulation of protein ubiquitination 2
GO:0031508 pericentric heterochromatin assembly 18
GO:0031540 regulation of anthocyanin biosynthetic process 8
GO:0031542 positive regulation of anthocyanin biosynthetic process 2
GO:0031567 mitotic cell size control checkpoint signaling 6
GO:0031570 DNA integrity checkpoint signaling 4
GO:0031663 lipopolysaccharide-mediated signaling pathway 2
GO:0031935 regulation of chromatin silencing 8
GO:0031937 positive regulation of chromatin silencing 14
GO:0031998 regulation of fatty acid beta-oxidation 2
GO:0032008 positive regulation of TOR signaling 4
GO:0032012 regulation of ARF protein signal transduction 10
GO:0032055 negative regulation of translation in response to stress 2
GO:0032147 activation of protein kinase activity 10
GO:0032212 positive regulation of telomere maintenance via telomerase 2
GO:0032268 regulation of cellular protein metabolic process 4
GO:0032269 negative regulation of cellular protein metabolic process 2
GO:0032784 regulation of DNA-templated transcription, elongation 14
GO:0032786 positive regulation of DNA-templated transcription, elongation 8
GO:0032875 regulation of DNA endoreduplication 10
GO:0032876 negative regulation of DNA endoreduplication 2
GO:0032877 positive regulation of DNA endoreduplication 4
GO:0032881 regulation of polysaccharide metabolic process 6
GO:0032886 regulation of microtubule-based process 2
GO:0032889 regulation of vacuole fusion, non-autophagic 2
GO:0032922 circadian regulation of gene expression 2
GO:0032928 regulation of superoxide anion generation 4
GO:0032953 regulation of (1->3)-beta-D-glucan biosynthetic process 2
GO:0032955 regulation of division septum assembly 24
GO:0032968 positive regulation of transcription elongation from RNA polymerase II promoter 32
GO:0033043 regulation of organelle organization 2
GO:0033184 positive regulation of histone ubiquitination 4
GO:0033234 negative regulation of protein sumoylation 6
GO:0033314 mitotic DNA replication checkpoint signaling 16
GO:0033316 meiotic spindle assembly checkpoint signaling 2
GO:0033674 positive regulation of kinase activity 6
GO:0034051 negative regulation of plant-type hypersensitive response 2
GO:0034052 positive regulation of plant-type hypersensitive response 2
GO:0034243 regulation of transcription elongation from RNA polymerase II promoter 2
GO:0034248 regulation of cellular amide metabolic process 2
GO:0034263 positive regulation of autophagy in response to ER overload 2
GO:0034314 Arp2/3 complex-mediated actin nucleation 12
GO:0034756 regulation of iron ion transport 14
GO:0034758 positive regulation of iron ion transport 8
GO:0035024 negative regulation of Rho protein signal transduction 2
GO:0035065 regulation of histone acetylation 6
GO:0035194 post-transcriptional gene silencing by RNA 2
GO:0035195 gene silencing by miRNA 4
GO:0035196 production of miRNAs involved in gene silencing by miRNA 4
GO:0035278 miRNA mediated inhibition of translation 56
GO:0035280 miRNA loading onto RISC involved in gene silencing by miRNA 4
GO:0035303 regulation of dephosphorylation 2
GO:0035556 intracellular signal transduction 22
GO:0040009 regulation of growth rate 10
GO:0040014 regulation of multicellular organism growth 2
GO:0040020 regulation of meiotic nuclear division 2
GO:0040029 regulation of gene expression, epigenetic 4
GO:0040034 regulation of development, heterochronic 2
GO:0042177 negative regulation of protein catabolic process 14
GO:0042306 regulation of protein import into nucleus 10
GO:0042549 photosystem II stabilization 2
GO:0042550 photosystem I stabilization 2
GO:0042752 regulation of circadian rhythm 20
GO:0042753 positive regulation of circadian rhythm 6
GO:0042754 negative regulation of circadian rhythm 10
GO:0043066 negative regulation of apoptotic process 6
GO:0043068 positive regulation of programmed cell death 4
GO:0043069 negative regulation of programmed cell death 4
GO:0043153 entrainment of circadian clock by photoperiod 10
GO:0043244 regulation of protein-containing complex disassembly 2
GO:0043254 regulation of protein-containing complex assembly 2
GO:0043255 regulation of carbohydrate biosynthetic process 4
GO:0043266 regulation of potassium ion transport 4
GO:0043407 negative regulation of MAP kinase activity 2
GO:0043433 negative regulation of DNA-binding transcription factor activity 4
GO:0043484 regulation of RNA splicing 2
GO:0043549 regulation of kinase activity 2
GO:0043609 regulation of carbon utilization 2
GO:0043619 regulation of transcription from RNA polymerase II promoter in response to oxidative stress 6
GO:0043666 regulation of phosphoprotein phosphatase activity 4
GO:0044030 regulation of DNA methylation 6
GO:0044070 regulation of anion transport 8
GO:0045010 actin nucleation 2
GO:0045014 carbon catabolite repression of transcription by glucose 2
GO:0045088 regulation of innate immune response 4
GO:0045454 cell redox homeostasis 2
GO:0045595 regulation of cell differentiation 6
GO:0045604 regulation of epidermal cell differentiation 6
GO:0045691 regulation of embryo sac central cell differentiation 4
GO:0045694 regulation of embryo sac egg cell differentiation 2
GO:0045723 positive regulation of fatty acid biosynthetic process 6
GO:0045727 positive regulation of translation 18
GO:0045732 positive regulation of protein catabolic process 2
GO:0045739 positive regulation of DNA repair 4
GO:0045765 regulation of angiogenesis 6
GO:0045770 positive regulation of asymmetric cell division 2
GO:0045787 positive regulation of cell cycle 2
GO:0045814 negative regulation of gene expression, epigenetic 2
GO:0045815 positive regulation of gene expression, epigenetic 2
GO:0045834 positive regulation of lipid metabolic process 2
GO:0045839 negative regulation of mitotic nuclear division 4
GO:0045841 negative regulation of mitotic metaphase/anaphase transition 2
GO:0045876 positive regulation of sister chromatid cohesion 10
GO:0045892 negative regulation of transcription, DNA-templated 8
GO:0045893 positive regulation of transcription, DNA-templated 4
GO:0045901 positive regulation of translational elongation 18
GO:0045905 positive regulation of translational termination 2
GO:0045910 negative regulation of DNA recombination 2
GO:0045926 negative regulation of growth 14
GO:0045927 positive regulation of growth 14
GO:0045931 positive regulation of mitotic cell cycle 2
GO:0045943 positive regulation of transcription by RNA polymerase I 2
GO:0045944 positive regulation of transcription by RNA polymerase II 34
GO:0045962 positive regulation of development, heterochronic 2
GO:0045995 regulation of embryonic development 16
GO:0046620 regulation of organ growth 2
GO:0046621 negative regulation of organ growth 56
GO:0046622 positive regulation of organ growth 6
GO:0046719 regulation by virus of viral protein levels in host cell 4
GO:0046885 regulation of hormone biosynthetic process 2
GO:0048015 phosphatidylinositol-mediated signaling 14
GO:0048016 inositol phosphate-mediated signaling 2
GO:0048026 positive regulation of mRNA splicing, via spliceosome 4
GO:0048255 mRNA stabilization 4
GO:0048505 regulation of timing of cell differentiation 2
GO:0048509 regulation of meristem development 2
GO:0048510 regulation of timing of transition from vegetative to reproductive phase 2
GO:0048518 positive regulation of biological process 6
GO:0048522 positive regulation of cellular process 4
GO:0048523 negative regulation of cellular process 4
GO:0048577 negative regulation of short-day photoperiodism, flowering 2
GO:0048583 regulation of response to stimulus 2
GO:0048584 positive regulation of response to stimulus 2
GO:0048587 regulation of short-day photoperiodism, flowering 14
GO:0048831 regulation of shoot system development 6
GO:0048833 specification of floral organ number 32
GO:0048834 specification of petal number 4
GO:0050691 regulation of defense response to virus by host 2
GO:0050732 negative regulation of peptidyl-tyrosine phosphorylation 2
GO:0050778 positive regulation of immune response 6
GO:0050792 regulation of viral process 4
GO:0050794 regulation of cellular process 18
GO:0051091 positive regulation of DNA-binding transcription factor activity 6
GO:0051093 negative regulation of developmental process 2
GO:0051094 positive regulation of developmental process 6
GO:0051127 positive regulation of actin nucleation 2
GO:0051128 regulation of cellular component organization 6
GO:0051171 regulation of nitrogen compound metabolic process 8
GO:0051172 negative regulation of nitrogen compound metabolic process 2
GO:0051173 positive regulation of nitrogen compound metabolic process 8
GO:0051214 RNAi-mediated antiviral immunity against RNA virus 4
GO:0051239 regulation of multicellular organismal process 2
GO:0051241 negative regulation of multicellular organismal process 2
GO:0051245 negative regulation of cellular defense response 8
GO:0051252 regulation of RNA metabolic process 4
GO:0051254 positive regulation of RNA metabolic process 4
GO:0051510 regulation of unidimensional cell growth 2
GO:0051511 negative regulation of unidimensional cell growth 8
GO:0051512 positive regulation of unidimensional cell growth 2
GO:0051513 regulation of monopolar cell growth 12
GO:0051571 positive regulation of histone H3-K4 methylation 8
GO:0051572 negative regulation of histone H3-K4 methylation 2
GO:0051573 negative regulation of histone H3-K9 methylation 2
GO:0051781 positive regulation of cell division 2
GO:0051783 regulation of nuclear division 2
GO:0051841 positive regulation by host of cytolysis of symbiont cells 32
GO:0051928 positive regulation of calcium ion transport 10
GO:0051973 positive regulation of telomerase activity 14
GO:0051983 regulation of chromosome segregation 2
GO:0060149 negative regulation of posttranscriptional gene silencing 2
GO:0060195 negative regulation of antisense RNA transcription 2
GO:0060255 regulation of macromolecule metabolic process 16
GO:0060261 positive regulation of transcription initiation from RNA polymerase II promoter 16
GO:0060267 positive regulation of respiratory burst 2
GO:0060567 negative regulation of DNA-templated transcription, termination 2
GO:0060628 regulation of ER to Golgi vesicle-mediated transport 8
GO:0060774 auxin mediated signaling pathway involved in phyllotactic patterning 2
GO:0060862 negative regulation of floral organ abscission 4
GO:0060966 regulation of gene silencing by RNA 2
GO:0060968 regulation of gene silencing 4
GO:0061158 3'-UTR-mediated mRNA destabilization 4
GO:0061866 negative regulation of histone H3-S10 phosphorylation 2
GO:0062207 regulation of pattern recognition receptor signaling pathway 2
GO:0070455 positive regulation of heme biosynthetic process 4
GO:0070481 nuclear-transcribed mRNA catabolic process, non-stop decay 2
GO:0070829 heterochromatin maintenance 4
GO:0070919 production of siRNA involved in chromatin silencing by small RNA 8
GO:0070920 regulation of production of small RNA involved in gene silencing by RNA 2
GO:0070940 dephosphorylation of RNA polymerase II C-terminal domain 50
GO:0070966 nuclear-transcribed mRNA catabolic process, no-go decay 26
GO:0071049 nuclear retention of pre-mRNA with aberrant 3'-ends at the site of transcription 2
GO:0071588 hydrogen peroxide mediated signaling pathway 6
GO:0071900 regulation of protein serine/threonine kinase activity 8
GO:0072344 rescue of stalled ribosome 12
GO:0080020 regulation of coenzyme A biosynthetic process 4
GO:0080036 regulation of cytokinin-activated signaling pathway 10
GO:0080037 negative regulation of cytokinin-activated signaling pathway 24
GO:0080038 positive regulation of cytokinin-activated signaling pathway 2
GO:0080040 positive regulation of cellular response to phosphate starvation 18
GO:0080090 regulation of primary metabolic process 4
GO:0080135 regulation of cellular response to stress 4
GO:0080141 regulation of jasmonic acid biosynthetic process 2
GO:0080142 regulation of salicylic acid biosynthetic process 10
GO:0080143 regulation of amino acid export 64
GO:0080149 sucrose induced translational repression 2
GO:0080151 positive regulation of salicylic acid mediated signaling pathway 2
GO:0080157 regulation of plant-type cell wall organization or biogenesis 8
GO:0080163 regulation of protein serine/threonine phosphatase activity 6
GO:0080164 regulation of nitric oxide metabolic process 4
GO:0080188 gene silencing by RNA-directed DNA methylation 42
GO:0090056 regulation of chlorophyll metabolic process 2
GO:0090063 positive regulation of microtubule nucleation 4
GO:0090065 regulation of production of siRNA involved in RNA interference 16
GO:0090069 regulation of ribosome biogenesis 4
GO:0090070 positive regulation of ribosome biogenesis 6
GO:0090153 regulation of sphingolipid biosynthetic process 2
GO:0090173 regulation of synaptonemal complex assembly 6
GO:0090213 regulation of radial pattern formation 4
GO:0090227 regulation of red or far-red light signaling pathway 4
GO:0090228 positive regulation of red or far-red light signaling pathway 14
GO:0090241 negative regulation of histone H4 acetylation 2
GO:0090266 regulation of mitotic cell cycle spindle assembly checkpoint 2
GO:0090309 positive regulation of DNA methylation-dependent heterochromatin assembly 2
GO:0090316 positive regulation of intracellular protein transport 2
GO:0090342 regulation of cell aging 4
GO:0090344 negative regulation of cell aging 8
GO:0090354 regulation of auxin metabolic process 6
GO:0090356 negative regulation of auxin metabolic process 14
GO:0090357 regulation of tryptophan metabolic process 2
GO:0090359 negative regulation of abscisic acid biosynthetic process 4
GO:0090709 regulation of timing of plant organ formation 10
GO:0097167 circadian regulation of translation 4
GO:0106118 regulation of sterol biosynthetic process 4
GO:0106167 extracellular ATP signaling 2
GO:0140426 PAMP-triggered immunity signalling pathway 2
GO:1900030 regulation of pectin biosynthetic process 2
GO:1900032 regulation of trichome patterning 4
GO:1900034 regulation of cellular response to heat 6
GO:1900035 negative regulation of cellular response to heat 2
GO:1900036 positive regulation of cellular response to heat 2
GO:1900039 positive regulation of cellular response to hypoxia 4
GO:1900055 regulation of leaf senescence 8
GO:1900064 positive regulation of peroxisome organization 2
GO:1900067 regulation of cellular response to alkaline pH 8
GO:1900070 negative regulation of cellular hyperosmotic salinity response 16
GO:1900088 regulation of inositol biosynthetic process 4
GO:1900103 positive regulation of endoplasmic reticulum unfolded protein response 2
GO:1900109 regulation of histone H3-K9 dimethylation 4
GO:1900140 regulation of seedling development 4
GO:1900150 regulation of defense response to fungus 12
GO:1900151 regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay 2
GO:1900186 negative regulation of clathrin-dependent endocytosis 8
GO:1900363 regulation of mRNA polyadenylation 2
GO:1900364 negative regulation of mRNA polyadenylation 10
GO:1900366 negative regulation of defense response to insect 2
GO:1900367 positive regulation of defense response to insect 6
GO:1900368 regulation of RNA interference 2
GO:1900369 negative regulation of RNA interference 4
GO:1900370 positive regulation of RNA interference 22
GO:1900384 regulation of flavonol biosynthetic process 4
GO:1900386 positive regulation of flavonol biosynthetic process 4
GO:1900409 positive regulation of cellular response to oxidative stress 12
GO:1900424 regulation of defense response to bacterium 12
GO:1900425 negative regulation of defense response to bacterium 36
GO:1900426 positive regulation of defense response to bacterium 8
GO:1900457 regulation of brassinosteroid mediated signaling pathway 6
GO:1900459 positive regulation of brassinosteroid mediated signaling pathway 38
GO:1900486 positive regulation of isopentenyl diphosphate biosynthetic process, mevalonate pathway 8
GO:1900706 positive regulation of siderophore biosynthetic process 96
GO:1901000 regulation of response to salt stress 2
GO:1901001 negative regulation of response to salt stress 20
GO:1901002 positive regulation of response to salt stress 2
GO:1901017 negative regulation of potassium ion transmembrane transporter activity 10
GO:1901181 negative regulation of cellular response to caffeine 2
GO:1901332 negative regulation of lateral root development 18
GO:1901333 positive regulation of lateral root development 4
GO:1901342 regulation of vasculature development 6
GO:1901347 negative regulation of secondary cell wall biogenesis 8
GO:1901371 regulation of leaf morphogenesis 2
GO:1901407 regulation of phosphorylation of RNA polymerase II C-terminal domain 2
GO:1901430 positive regulation of syringal lignin biosynthetic process 14
GO:1901485 positive regulation of transcription factor catabolic process 6
GO:1901527 abscisic acid-activated signaling pathway involved in stomatal movement 16
GO:1901528 hydrogen peroxide mediated signaling pathway involved in stomatal movement 16
GO:1901529 positive regulation of anion channel activity 8
GO:1901537 positive regulation of DNA demethylation 18
GO:1901651 regulation of mitotic chromosome decondensation 8
GO:1901672 positive regulation of systemic acquired resistance 8
GO:1901673 regulation of mitotic spindle assembly 12
GO:1901799 negative regulation of proteasomal protein catabolic process 2
GO:1901800 positive regulation of proteasomal protein catabolic process 2
GO:1901918 negative regulation of exoribonuclease activity 2
GO:1901957 regulation of cutin biosynthetic process 12
GO:1901959 positive regulation of cutin biosynthetic process 2
GO:1901969 positive regulation of polynucleotide 3'-phosphatase activity 2
GO:1901997 negative regulation of indoleacetic acid biosynthetic process via tryptophan 4
GO:1902009 positive regulation of toxin transport 4
GO:1902039 negative regulation of seed dormancy process 6
GO:1902066 regulation of cell wall pectin metabolic process 4
GO:1902183 regulation of shoot apical meristem development 2
GO:1902184 negative regulation of shoot apical meristem development 2
GO:1902288 regulation of defense response to oomycetes 40
GO:1902289 negative regulation of defense response to oomycetes 4
GO:1902290 positive regulation of defense response to oomycetes 22
GO:1902446 regulation of shade avoidance 6
GO:1902455 negative regulation of stem cell population maintenance 2
GO:1902456 regulation of stomatal opening 6
GO:1902457 negative regulation of stomatal opening 8
GO:1902458 positive regulation of stomatal opening 2
GO:1902459 positive regulation of stem cell population maintenance 2
GO:1902464 regulation of histone H3-K27 trimethylation 8
GO:1902466 positive regulation of histone H3-K27 trimethylation 2
GO:1902531 regulation of intracellular signal transduction 2
GO:1902553 positive regulation of catalase activity 2
GO:1902584 positive regulation of response to water deprivation 2
GO:1902659 regulation of glucose mediated signaling pathway 4
GO:1902892 positive regulation of root hair elongation 2
GO:1902916 positive regulation of protein polyubiquitination 8
GO:1903034 regulation of response to wounding 14
GO:1903099 positive regulation of CENP-A containing nucleosome assembly 6
GO:1903224 regulation of endodermal cell differentiation 2
GO:1903311 regulation of mRNA metabolic process 22
GO:1903343 positive regulation of meiotic DNA double-strand break formation 2
GO:1903427 negative regulation of reactive oxygen species biosynthetic process 22
GO:1903428 positive regulation of reactive oxygen species biosynthetic process 2
GO:1903506 regulation of nucleic acid-templated transcription 4
GO:1903527 positive regulation of membrane tubulation 2
GO:1903578 regulation of ATP metabolic process 6
GO:1903647 negative regulation of chlorophyll catabolic process 10
GO:1903730 regulation of phosphatidate phosphatase activity 6
GO:1903942 positive regulation of respiratory gaseous exchange 2
GO:1904143 positive regulation of carotenoid biosynthetic process 4
GO:1904263 positive regulation of TORC1 signaling 4
GO:1904277 negative regulation of wax biosynthetic process 14
GO:1904292 regulation of ERAD pathway 2
GO:1904294 positive regulation of ERAD pathway 12
GO:1904667 negative regulation of ubiquitin protein ligase activity 8
GO:1904668 positive regulation of ubiquitin protein ligase activity 28
GO:1904964 positive regulation of phytol biosynthetic process 12
GO:1905034 regulation of antifungal innate immune response 8
GO:1905038 regulation of membrane lipid metabolic process 2
GO:1905157 positive regulation of photosynthesis 2
GO:1905168 positive regulation of double-strand break repair via homologous recombination 4
GO:1905183 negative regulation of protein serine/threonine phosphatase activity 2
GO:1905421 regulation of plant organ morphogenesis 2
GO:1905435 regulation of histone H3-K4 trimethylation 4
GO:1905516 positive regulation of fertilization 2
GO:1905642 negative regulation of DNA methylation 10
GO:1905775 negative regulation of DNA helicase activity 6
GO:1905885 positive regulation of triglyceride transport 4
GO:2000008 regulation of protein localization to cell surface 32
GO:2000012 regulation of auxin polar transport 4
GO:2000022 regulation of jasmonic acid mediated signaling pathway 18
GO:2000024 regulation of leaf development 8
GO:2000025 regulation of leaf formation 2
GO:2000028 regulation of photoperiodism, flowering 20
GO:2000029 regulation of proanthocyanidin biosynthetic process 2
GO:2000030 regulation of response to red or far red light 2
GO:2000031 regulation of salicylic acid mediated signaling pathway 16
GO:2000032 regulation of secondary shoot formation 4
GO:2000033 regulation of seed dormancy process 54
GO:2000042 negative regulation of double-strand break repair via homologous recombination 4
GO:2000071 regulation of defense response by callose deposition 14
GO:2000073 regulation of cytokinesis, site selection 4
GO:2000082 regulation of L-ascorbic acid biosynthetic process 2
GO:2000083 negative regulation of L-ascorbic acid biosynthetic process 12
GO:2000104 negative regulation of DNA-dependent DNA replication 6
GO:2000112 regulation of cellular macromolecule biosynthetic process 8
GO:2000113 negative regulation of cellular macromolecule biosynthetic process 18
GO:2000117 negative regulation of cysteine-type endopeptidase activity 2
GO:2000123 positive regulation of stomatal complex development 8
GO:2000134 negative regulation of G1/S transition of mitotic cell cycle 2
GO:2000143 negative regulation of DNA-templated transcription, initiation 48
GO:2000214 regulation of proline metabolic process 12
GO:2000232 regulation of rRNA processing 10
GO:2000234 positive regulation of rRNA processing 8
GO:2000280 regulation of root development 2
GO:2000306 positive regulation of photomorphogenesis 4
GO:2000369 regulation of clathrin-dependent endocytosis 2
GO:2000377 regulation of reactive oxygen species metabolic process 2
GO:2000378 negative regulation of reactive oxygen species metabolic process 2
GO:2000469 negative regulation of peroxidase activity 2
GO:2000541 positive regulation of protein geranylgeranylation 2
GO:2000617 positive regulation of histone H3-K9 acetylation 2
GO:2000636 positive regulation of primary miRNA processing 6
GO:2000641 regulation of early endosome to late endosome transport 30
GO:2000652 regulation of secondary cell wall biogenesis 8
GO:2000653 regulation of genetic imprinting 2
GO:2000685 positive regulation of cellular response to X-ray 2
GO:2000694 regulation of phragmoplast microtubule organization 2
GO:2000711 positive regulation of maintenance of meiotic sister chromatid cohesion, centromeric 2
GO:2000762 regulation of phenylpropanoid metabolic process 28
GO:2000769 regulation of establishment or maintenance of cell polarity regulating cell shape 4
GO:2000786 positive regulation of autophagosome assembly 2
GO:2000905 negative regulation of starch metabolic process 6
GO:2001006 regulation of cellulose biosynthetic process 4
GO:2001007 negative regulation of cellulose biosynthetic process 34
GO:2001011 positive regulation of plant-type cell wall cellulose biosynthetic process 4
GO:2001141 regulation of RNA biosynthetic process 10
GO:2001253 regulation of histone H3-K36 trimethylation 2
GO:2001280 positive regulation of unsaturated fatty acid biosynthetic process 2

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001