Functional clusters

Information

  • Type Gene Ontology
  • Description regulation of response to stimulus

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Acer truncatum chr9 3 CH_acertr_333 10 28 0.0000873629
Acer truncatum chr9 4 CH_acertr_333 10 28 0.0000873629

Available child term results

Ontology identifier Description Number of clusters
GO:0002220 innate immune response activating cell surface receptor signaling pathway 16
GO:0002221 pattern recognition receptor signaling pathway 6
GO:0002230 positive regulation of defense response to virus by host 40
GO:0002253 activation of immune response 8
GO:0002752 cell surface pattern recognition receptor signaling pathway 4
GO:0002758 innate immune response-activating signal transduction 30
GO:0002831 regulation of response to biotic stimulus 2
GO:0006282 regulation of DNA repair 2
GO:0009787 regulation of abscisic acid-activated signaling pathway 12
GO:0009788 negative regulation of abscisic acid-activated signaling pathway 6
GO:0009789 positive regulation of abscisic acid-activated signaling pathway 2
GO:0009864 induced systemic resistance, jasmonic acid mediated signaling pathway 8
GO:0009866 induced systemic resistance, ethylene mediated signaling pathway 8
GO:0009937 regulation of gibberellic acid mediated signaling pathway 8
GO:0009939 positive regulation of gibberellic acid mediated signaling pathway 2
GO:0009966 regulation of signal transduction 8
GO:0010099 regulation of photomorphogenesis 4
GO:0010104 regulation of ethylene-activated signaling pathway 20
GO:0010105 negative regulation of ethylene-activated signaling pathway 12
GO:0010112 regulation of systemic acquired resistance 38
GO:0010186 positive regulation of cellular defense response 6
GO:0010221 negative regulation of vernalization response 8
GO:0010315 auxin efflux 16
GO:0010363 regulation of plant-type hypersensitive response 2
GO:0010569 regulation of double-strand break repair via homologous recombination 8
GO:0031348 negative regulation of defense response 22
GO:0032008 positive regulation of TOR signaling 4
GO:0032012 regulation of ARF protein signal transduction 10
GO:0034051 negative regulation of plant-type hypersensitive response 2
GO:0034052 positive regulation of plant-type hypersensitive response 2
GO:0035024 negative regulation of Rho protein signal transduction 2
GO:0043407 negative regulation of MAP kinase activity 2
GO:0045088 regulation of innate immune response 4
GO:0045739 positive regulation of DNA repair 4
GO:0048577 negative regulation of short-day photoperiodism, flowering 2
GO:0048584 positive regulation of response to stimulus 2
GO:0048587 regulation of short-day photoperiodism, flowering 14
GO:0050691 regulation of defense response to virus by host 2
GO:0050778 positive regulation of immune response 6
GO:0051245 negative regulation of cellular defense response 8
GO:0051841 positive regulation by host of cytolysis of symbiont cells 32
GO:0062207 regulation of pattern recognition receptor signaling pathway 2
GO:0080036 regulation of cytokinin-activated signaling pathway 10
GO:0080037 negative regulation of cytokinin-activated signaling pathway 24
GO:0080038 positive regulation of cytokinin-activated signaling pathway 2
GO:0080040 positive regulation of cellular response to phosphate starvation 18
GO:0080135 regulation of cellular response to stress 4
GO:0080151 positive regulation of salicylic acid mediated signaling pathway 2
GO:0090227 regulation of red or far-red light signaling pathway 4
GO:0090228 positive regulation of red or far-red light signaling pathway 14
GO:0090266 regulation of mitotic cell cycle spindle assembly checkpoint 2
GO:0140426 PAMP-triggered immunity signalling pathway 2
GO:1900034 regulation of cellular response to heat 6
GO:1900035 negative regulation of cellular response to heat 2
GO:1900036 positive regulation of cellular response to heat 2
GO:1900039 positive regulation of cellular response to hypoxia 4
GO:1900067 regulation of cellular response to alkaline pH 8
GO:1900070 negative regulation of cellular hyperosmotic salinity response 16
GO:1900103 positive regulation of endoplasmic reticulum unfolded protein response 2
GO:1900150 regulation of defense response to fungus 12
GO:1900366 negative regulation of defense response to insect 2
GO:1900367 positive regulation of defense response to insect 6
GO:1900409 positive regulation of cellular response to oxidative stress 12
GO:1900424 regulation of defense response to bacterium 12
GO:1900425 negative regulation of defense response to bacterium 36
GO:1900426 positive regulation of defense response to bacterium 8
GO:1900457 regulation of brassinosteroid mediated signaling pathway 6
GO:1900459 positive regulation of brassinosteroid mediated signaling pathway 38
GO:1901000 regulation of response to salt stress 2
GO:1901001 negative regulation of response to salt stress 20
GO:1901002 positive regulation of response to salt stress 2
GO:1901181 negative regulation of cellular response to caffeine 2
GO:1901672 positive regulation of systemic acquired resistance 8
GO:1902288 regulation of defense response to oomycetes 40
GO:1902289 negative regulation of defense response to oomycetes 4
GO:1902290 positive regulation of defense response to oomycetes 22
GO:1902446 regulation of shade avoidance 6
GO:1902531 regulation of intracellular signal transduction 2
GO:1902584 positive regulation of response to water deprivation 2
GO:1902659 regulation of glucose mediated signaling pathway 4
GO:1903034 regulation of response to wounding 14
GO:1904263 positive regulation of TORC1 signaling 4
GO:1904292 regulation of ERAD pathway 2
GO:1904294 positive regulation of ERAD pathway 12
GO:1905034 regulation of antifungal innate immune response 8
GO:1905168 positive regulation of double-strand break repair via homologous recombination 4
GO:2000022 regulation of jasmonic acid mediated signaling pathway 18
GO:2000028 regulation of photoperiodism, flowering 20
GO:2000030 regulation of response to red or far red light 2
GO:2000031 regulation of salicylic acid mediated signaling pathway 16
GO:2000042 negative regulation of double-strand break repair via homologous recombination 4
GO:2000071 regulation of defense response by callose deposition 14
GO:2000306 positive regulation of photomorphogenesis 4
GO:2000685 positive regulation of cellular response to X-ray 2

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001