Functional clusters

Information

Species	Chromosome	Experiment	Cluster id	Cluster size	Number of genes	E-value
Capsicum annuum	PGAv.1.6.scaffold298	3	CH_can_150	6	6	0.0000000440651
Corylus avellana	9	3	CH_cav_303	5	8	0.000207639
Carica papaya	supercontig_89	3	CH_cpa_145	7	22	0.0000823454
Durio zibethinus	NW_019168481.1	3	CH_dzi_221	8	30	0.0000781531
Gossypium hirsutum	D02	3	CH_ghi_400	6	10	0.000041516
Gossypium raimondii	Chr04	3	CH_gra_185	6	9	0.000015654
Gossypium raimondii	Chr05	3	CH_gra_199	6	10	0.0000386963
Quercus lobata	4	3	CH_qlo_363	11	42	0.0000000142161
Rosa chinensis	RcHm_v2.0_Chr1	3	CH_rch_559	4	4	0.0000846122
Theobroma cacao	Chromosome_10	3	CH_tca_304	6	13	0.000139487
Theobroma cacao	Chromosome_6	3	CH_tca_348	6	15	0.000398482
Capsicum annuum	PGAv.1.6.scaffold298	4	CH_can_150	6	6	0.0000000440651
Corylus avellana	9	4	CH_cav_303	5	8	0.000207639
Carica papaya	supercontig_89	4	CH_cpa_145	7	22	0.0000823454
Durio zibethinus	NW_019168481.1	4	CH_dzi_221	8	30	0.0000781531
Gossypium hirsutum	D02	4	CH_ghi_400	6	10	0.000041516
Gossypium raimondii	Chr04	4	CH_gra_185	6	9	0.000015654
Gossypium raimondii	Chr05	4	CH_gra_199	6	10	0.0000386963
Quercus lobata	4	4	CH_qlo_363	11	42	0.0000000142161
Rosa chinensis	RcHm_v2.0_Chr1	4	CH_rch_559	4	4	0.0000846122
Theobroma cacao	Chromosome_10	4	CH_tca_304	6	13	0.000139487
Theobroma cacao	Chromosome_6	4	CH_tca_348	6	15	0.000398482

Ontology identifier	Description	Number of clusters
GO:0000160	phosphorelay signal transduction system	24
GO:0007094	mitotic spindle assembly checkpoint signaling	8
GO:0007095	mitotic G2 DNA damage checkpoint signaling	8
GO:0007264	small GTPase mediated signal transduction	10
GO:0009866	induced systemic resistance, ethylene mediated signaling pathway	8
GO:0009873	ethylene-activated signaling pathway	216
GO:0010104	regulation of ethylene-activated signaling pathway	20
GO:0010105	negative regulation of ethylene-activated signaling pathway	12
GO:0019722	calcium-mediated signaling	6
GO:0031567	mitotic cell size control checkpoint signaling	6
GO:0031570	DNA integrity checkpoint signaling	4
GO:0032008	positive regulation of TOR signaling	4
GO:0032012	regulation of ARF protein signal transduction	10
GO:0033314	mitotic DNA replication checkpoint signaling	16
GO:0033316	meiotic spindle assembly checkpoint signaling	2
GO:0035024	negative regulation of Rho protein signal transduction	2
GO:0043407	negative regulation of MAP kinase activity	2
GO:0048015	phosphatidylinositol-mediated signaling	14
GO:0048016	inositol phosphate-mediated signaling	2
GO:0090266	regulation of mitotic cell cycle spindle assembly checkpoint	2
GO:1902531	regulation of intracellular signal transduction	2
GO:1904263	positive regulation of TORC1 signaling	4

Exp id	Data type	Data filter	Min genes cluster	Max genes cluster	Max cluster size	E-value
1	MapMan	No filter applied.	2	30	80	0.001
2	MapMan	No filter applied.	2	30	80	0.001
3	GO	All GO data.	2	30	80	0.001
4	GO	All GO data.	2	30	80	0.001
5	InterPro	No filter applied.	2	30	80	0.001
6	InterPro	No filter applied.	2	30	80	0.001