Functional clusters
Information
- Type Gene Ontology
- Description regulation of defense response to bacterium
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Helianthus annuus | HanXRQChr15 | 3 | CH_han_360 | 3 | 3 | 0.00000344952 |
| Lactuca sativa | Lsat_1_v8_lg_9 | 3 | CH_lsa_244 | 3 | 3 | 0.00000269494 |
| Sequoiadendron giganteum | chr9 | 3 | CH_sgi_427 | 5 | 9 | 0.000000000756937 |
| Sequoiadendron giganteum | chr9 | 3 | CH_sgi_54 | 11 | 18 | 5.09063e-27 |
| Sequoiadendron giganteum | chr9 | 3 | CH_sgi_564 | 4 | 5 | 0.0000000475022 |
| Trochodendron aralioides | group16 | 3 | CH_tar_39 | 5 | 5 | 0.00000000000327927 |
| Helianthus annuus | HanXRQChr15 | 4 | CH_han_360 | 3 | 3 | 0.00000344952 |
| Lactuca sativa | Lsat_1_v8_lg_9 | 4 | CH_lsa_244 | 3 | 3 | 0.00000269494 |
| Sequoiadendron giganteum | chr9 | 4 | CH_sgi_427 | 5 | 9 | 0.000000000756937 |
| Sequoiadendron giganteum | chr9 | 4 | CH_sgi_54 | 11 | 18 | 5.09063e-27 |
| Sequoiadendron giganteum | chr9 | 4 | CH_sgi_564 | 4 | 5 | 0.0000000475022 |
| Trochodendron aralioides | group16 | 4 | CH_tar_39 | 5 | 5 | 0.00000000000327927 |
Available child term results
| Ontology identifier | Description | Number of clusters |
|---|---|---|
| GO:1900425 | negative regulation of defense response to bacterium | 36 |
| GO:1900426 | positive regulation of defense response to bacterium | 8 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |