Functional clusters

Information

  • Type Gene Ontology
  • Description regulation of signal transduction

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Amaranthus hybridus AmaHy_arrow1_Scaffold_10 3 CH_amhyb_172 5 8 0.000349656
Carya illinoinensis Chr08 3 CH_cil_481 5 7 0.000522854
Sequoiadendron giganteum chr8 3 CH_sgi_1269 4 4 0.000469287
Solanum pennellii Spenn-ch10 3 CH_spe_453 9 70 0.000775439
Amaranthus hybridus AmaHy_arrow1_Scaffold_10 4 CH_amhyb_172 5 8 0.000349656
Carya illinoinensis Chr08 4 CH_cil_481 5 7 0.000522854
Sequoiadendron giganteum chr8 4 CH_sgi_1269 4 4 0.000469287
Solanum pennellii Spenn-ch10 4 CH_spe_453 9 70 0.000775439

Available child term results

Ontology identifier Description Number of clusters
GO:0009787 regulation of abscisic acid-activated signaling pathway 12
GO:0009788 negative regulation of abscisic acid-activated signaling pathway 6
GO:0009789 positive regulation of abscisic acid-activated signaling pathway 2
GO:0009937 regulation of gibberellic acid mediated signaling pathway 8
GO:0009939 positive regulation of gibberellic acid mediated signaling pathway 2
GO:0010104 regulation of ethylene-activated signaling pathway 20
GO:0010105 negative regulation of ethylene-activated signaling pathway 12
GO:0010315 auxin efflux 16
GO:0032008 positive regulation of TOR signaling 4
GO:0032012 regulation of ARF protein signal transduction 10
GO:0035024 negative regulation of Rho protein signal transduction 2
GO:0043407 negative regulation of MAP kinase activity 2
GO:0062207 regulation of pattern recognition receptor signaling pathway 2
GO:0080036 regulation of cytokinin-activated signaling pathway 10
GO:0080037 negative regulation of cytokinin-activated signaling pathway 24
GO:0080038 positive regulation of cytokinin-activated signaling pathway 2
GO:0080151 positive regulation of salicylic acid mediated signaling pathway 2
GO:0090227 regulation of red or far-red light signaling pathway 4
GO:0090228 positive regulation of red or far-red light signaling pathway 14
GO:0090266 regulation of mitotic cell cycle spindle assembly checkpoint 2
GO:1900103 positive regulation of endoplasmic reticulum unfolded protein response 2
GO:1900457 regulation of brassinosteroid mediated signaling pathway 6
GO:1900459 positive regulation of brassinosteroid mediated signaling pathway 38
GO:1902531 regulation of intracellular signal transduction 2
GO:1902659 regulation of glucose mediated signaling pathway 4
GO:1904263 positive regulation of TORC1 signaling 4
GO:2000022 regulation of jasmonic acid mediated signaling pathway 18
GO:2000031 regulation of salicylic acid mediated signaling pathway 16

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001