Functional clusters

Information

  • Type Gene Ontology
  • Description positive regulation of cellular metabolic process

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Solanum lycopersicum SL4.0ch04 3 CH_sly_316 8 16 0.0000394145
Solanum lycopersicum SL4.0ch04 4 CH_sly_316 8 16 0.0000394145

Available child term results

Ontology identifier Description Number of clusters
GO:0000288 nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay 2
GO:0000289 nuclear-transcribed mRNA poly(A) tail shortening 8
GO:0000290 deadenylation-dependent decapping of nuclear-transcribed mRNA 10
GO:0006990 positive regulation of transcription from RNA polymerase II promoter involved in unfolded protein response 6
GO:0010116 positive regulation of abscisic acid biosynthetic process 6
GO:0010365 positive regulation of ethylene biosynthetic process 16
GO:0010372 positive regulation of gibberellin biosynthetic process 2
GO:0010513 positive regulation of phosphatidylinositol biosynthetic process 2
GO:0010601 positive regulation of auxin biosynthetic process 2
GO:0010726 positive regulation of hydrogen peroxide metabolic process 22
GO:0010729 positive regulation of hydrogen peroxide biosynthetic process 6
GO:0010845 positive regulation of reciprocal meiotic recombination 2
GO:0010922 positive regulation of phosphatase activity 12
GO:0031328 positive regulation of cellular biosynthetic process 4
GO:0032147 activation of protein kinase activity 10
GO:0032212 positive regulation of telomere maintenance via telomerase 2
GO:0032786 positive regulation of DNA-templated transcription, elongation 8
GO:0032877 positive regulation of DNA endoreduplication 4
GO:0032968 positive regulation of transcription elongation from RNA polymerase II promoter 32
GO:0033184 positive regulation of histone ubiquitination 4
GO:0033674 positive regulation of kinase activity 6
GO:0034263 positive regulation of autophagy in response to ER overload 2
GO:0045723 positive regulation of fatty acid biosynthetic process 6
GO:0045727 positive regulation of translation 18
GO:0045739 positive regulation of DNA repair 4
GO:0045893 positive regulation of transcription, DNA-templated 4
GO:0045901 positive regulation of translational elongation 18
GO:0045905 positive regulation of translational termination 2
GO:0045943 positive regulation of transcription by RNA polymerase I 2
GO:0045944 positive regulation of transcription by RNA polymerase II 34
GO:0048026 positive regulation of mRNA splicing, via spliceosome 4
GO:0051254 positive regulation of RNA metabolic process 4
GO:0051571 positive regulation of histone H3-K4 methylation 8
GO:0051973 positive regulation of telomerase activity 14
GO:0060261 positive regulation of transcription initiation from RNA polymerase II promoter 16
GO:0061158 3'-UTR-mediated mRNA destabilization 4
GO:0070455 positive regulation of heme biosynthetic process 4
GO:1900151 regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay 2
GO:1900486 positive regulation of isopentenyl diphosphate biosynthetic process, mevalonate pathway 8
GO:1900706 positive regulation of siderophore biosynthetic process 96
GO:1901430 positive regulation of syringal lignin biosynthetic process 14
GO:1901485 positive regulation of transcription factor catabolic process 6
GO:1901537 positive regulation of DNA demethylation 18
GO:1901800 positive regulation of proteasomal protein catabolic process 2
GO:1901969 positive regulation of polynucleotide 3'-phosphatase activity 2
GO:1902466 positive regulation of histone H3-K27 trimethylation 2
GO:1902916 positive regulation of protein polyubiquitination 8
GO:1903343 positive regulation of meiotic DNA double-strand break formation 2
GO:1903428 positive regulation of reactive oxygen species biosynthetic process 2
GO:1904143 positive regulation of carotenoid biosynthetic process 4
GO:1904294 positive regulation of ERAD pathway 12
GO:1904668 positive regulation of ubiquitin protein ligase activity 28
GO:1904964 positive regulation of phytol biosynthetic process 12
GO:1905157 positive regulation of photosynthesis 2
GO:1905168 positive regulation of double-strand break repair via homologous recombination 4
GO:2000234 positive regulation of rRNA processing 8
GO:2000541 positive regulation of protein geranylgeranylation 2
GO:2000617 positive regulation of histone H3-K9 acetylation 2
GO:2000636 positive regulation of primary miRNA processing 6
GO:2000786 positive regulation of autophagosome assembly 2
GO:2001011 positive regulation of plant-type cell wall cellulose biosynthetic process 4
GO:2001280 positive regulation of unsaturated fatty acid biosynthetic process 2

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001