Functional clusters

Information

  • Type Gene Ontology
  • Description cell surface receptor signaling pathway

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Arabidopsis thaliana Chr1 3 CH_ath_113 6 14 0.00000000732882
Arabidopsis thaliana Chr3 3 CH_ath_51 7 11 0.00000000000142767
Helianthus annuus HanXRQChr08 3 CH_han_162 5 8 0.000000000700662
Oryza sativa ssp. japonica chr11 3 CH_osa_13 15 39 7.30469e-22
Pisum sativum chr4LG4 3 CH_psa_177 3 3 0.0000165715
Solanum tuberosum ST4.03ch09 3 CH_stu_316 7 56 0.0000113585
Solanum tuberosum ST4.03ch09 3 CH_stu_320 4 5 0.0000129689
Solanum tuberosum ST4.03ch09 3 CH_stu_324 6 31 0.0000139418
Solanum tuberosum ST4.03ch06 3 CH_stu_8 17 26 2.38272e-33
Arabidopsis thaliana Chr1 4 CH_ath_113 6 14 0.00000000732882
Arabidopsis thaliana Chr3 4 CH_ath_51 7 11 0.00000000000142767
Helianthus annuus HanXRQChr08 4 CH_han_162 5 8 0.000000000700662
Oryza sativa ssp. japonica chr11 4 CH_osa_13 15 39 7.30469e-22
Pisum sativum chr4LG4 4 CH_psa_177 3 3 0.0000165715
Solanum tuberosum ST4.03ch09 4 CH_stu_316 7 56 0.0000113585
Solanum tuberosum ST4.03ch09 4 CH_stu_320 4 5 0.0000129689
Solanum tuberosum ST4.03ch09 4 CH_stu_324 6 31 0.0000139418
Solanum tuberosum ST4.03ch06 4 CH_stu_8 17 26 2.38272e-33

Available child term results

Ontology identifier Description Number of clusters
GO:0002220 innate immune response activating cell surface receptor signaling pathway 16
GO:0002752 cell surface pattern recognition receptor signaling pathway 4
GO:0007178 transmembrane receptor protein serine/threonine kinase signaling pathway 12
GO:0007219 Notch signaling pathway 4
GO:0031663 lipopolysaccharide-mediated signaling pathway 2

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001