Functional clusters
Information
- Type Gene Ontology
- Description endoplasmic reticulum unfolded protein response
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Acer truncatum | chr13 | 3 | CH_acertr_213 | 3 | 3 | 0.0000041748 |
| Arabidopsis lyrata | scaffold_1 | 3 | CH_aly_39 | 5 | 6 | 0.0000000000173751 |
| Arabidopsis thaliana | Chr1 | 3 | CH_ath_83 | 5 | 14 | 0.000000000395882 |
| Amborella trichopoda | AmTr_v1.0_scaffold00001 | 3 | CH_atr_95 | 4 | 7 | 0.000000125129 |
| Brassica napus | C09 | 3 | CH_bna_68 | 5 | 6 | 0.00000000000454292 |
| Capsicum annuum | PGAv.1.6.scaffold100 | 3 | CH_can_153 | 4 | 5 | 0.0000000505886 |
| Capsicum annuum | PGAv.1.6.scaffold308 | 3 | CH_can_207 | 4 | 11 | 0.00000332678 |
| Coffea canephora | chr10 | 3 | CH_ccan_57 | 4 | 35 | 0.00000000866477 |
| Citrus clementina | scaffold_3 | 3 | CH_ccl_7 | 15 | 24 | 2.4383e-36 |
| Carpinus fangiana | Cfa03 | 3 | CH_cfa_148 | 3 | 3 | 0.00000189286 |
| Cucumis melo | chr04 | 3 | CH_cme_130 | 3 | 3 | 0.00000453954 |
| Cucumis sativus L. | chr3 | 3 | CH_csa_143 | 3 | 3 | 0.00000852947 |
| Cucumis sativus L. | chr5 | 3 | CH_csa_159 | 3 | 4 | 0.0000341004 |
| Erigeron canadensis | Conyza_canadensis_scaffold:6 | 3 | CH_eca_180 | 3 | 3 | 0.00000344319 |
| Eucalyptus grandis | Chr10 | 3 | CH_egr_159 | 7 | 9 | 6.12387e-16 |
| Eucalyptus grandis | Chr03 | 3 | CH_egr_208 | 9 | 60 | 0.000000000000170133 |
| Erythranthe guttata | scaffold_12 | 3 | CH_egut_34 | 7 | 7 | 3.08806e-17 |
| Eutrema salsugineum | scaffold_5 | 3 | CH_esa_115 | 3 | 3 | 0.00000487118 |
| Helianthus annuus | HanXRQChr02 | 3 | CH_han_249 | 4 | 6 | 0.000000120315 |
| Helianthus annuus | HanXRQChr13 | 3 | CH_han_397 | 3 | 3 | 0.0000134039 |
| Lonicera japonica | GWHAAZE00000003 | 3 | CH_lonja_67 | 7 | 9 | 6.28347e-17 |
| Lactuca sativa | Lsat_1_v8_lg_2 | 3 | CH_lsa_82 | 5 | 6 | 0.0000000000166839 |
| Medicago truncatula | chr4 | 3 | CH_mtr_280 | 4 | 9 | 0.0000000801286 |
| Punica granatum | NC_045130.1 | 3 | CH_pgr_10 | 10 | 21 | 6.62774e-23 |
| Papaver somniferum | NW_020620714.1 | 3 | CH_pso_204 | 4 | 6 | 0.0000000122166 |
| Phaseolus vulgaris | Chr05 | 3 | CH_pvu_206 | 3 | 4 | 0.0000220163 |
| Rosa chinensis | RcHm_v2.0_Chr7 | 3 | CH_rch_76 | 8 | 29 | 6.67435e-16 |
| Sechium edule | LG04 | 3 | CH_sed_113 | 4 | 9 | 0.00000121201 |
| Sequoiadendron giganteum | chr3 | 3 | CH_sgi_118 | 9 | 25 | 2.6893e-20 |
| Schrenkiella parvula | ch1-1 | 3 | CH_spa_105 | 3 | 5 | 0.0000422768 |
| Solanum tuberosum | ST4.03ch06 | 3 | CH_stu_150 | 5 | 10 | 0.00000000220853 |
| Trifolium pratense | Tp57577_TGAC_v2_LG4 | 3 | CH_tpr_255 | 3 | 8 | 0.000174903 |
| Vaccinium macrocarpon | chr3_Vaccinium_macrocarpon_Stevens_v1 | 3 | CH_vma_191 | 4 | 21 | 0.0000552776 |
| Vigna mungo | CM024079.1 | 3 | CH_vmu_61 | 4 | 5 | 0.0000000156789 |
| Vanilla planifolia | CM028161.1 | 3 | CH_vpl_285 | 3 | 8 | 0.000311192 |
| Acer truncatum | chr13 | 4 | CH_acertr_213 | 3 | 3 | 0.0000041748 |
| Arabidopsis lyrata | scaffold_1 | 4 | CH_aly_39 | 5 | 6 | 0.0000000000173751 |
| Arabidopsis thaliana | Chr1 | 4 | CH_ath_83 | 5 | 14 | 0.000000000395882 |
| Amborella trichopoda | AmTr_v1.0_scaffold00001 | 4 | CH_atr_95 | 4 | 7 | 0.000000125129 |
| Brassica napus | C09 | 4 | CH_bna_68 | 5 | 6 | 0.00000000000454292 |
| Capsicum annuum | PGAv.1.6.scaffold100 | 4 | CH_can_153 | 4 | 5 | 0.0000000505886 |
| Capsicum annuum | PGAv.1.6.scaffold308 | 4 | CH_can_207 | 4 | 11 | 0.00000332678 |
| Coffea canephora | chr10 | 4 | CH_ccan_57 | 4 | 35 | 0.00000000866477 |
| Citrus clementina | scaffold_3 | 4 | CH_ccl_7 | 15 | 24 | 2.4383e-36 |
| Carpinus fangiana | Cfa03 | 4 | CH_cfa_148 | 3 | 3 | 0.00000189286 |
| Cucumis melo | chr04 | 4 | CH_cme_130 | 3 | 3 | 0.00000453954 |
| Cucumis sativus L. | chr3 | 4 | CH_csa_143 | 3 | 3 | 0.00000852947 |
| Cucumis sativus L. | chr5 | 4 | CH_csa_159 | 3 | 4 | 0.0000341004 |
| Erigeron canadensis | Conyza_canadensis_scaffold:6 | 4 | CH_eca_180 | 3 | 3 | 0.00000344319 |
| Eucalyptus grandis | Chr10 | 4 | CH_egr_159 | 7 | 9 | 6.12387e-16 |
| Eucalyptus grandis | Chr03 | 4 | CH_egr_208 | 9 | 60 | 0.000000000000170133 |
| Erythranthe guttata | scaffold_12 | 4 | CH_egut_34 | 7 | 7 | 3.08806e-17 |
| Eutrema salsugineum | scaffold_5 | 4 | CH_esa_115 | 3 | 3 | 0.00000487118 |
| Helianthus annuus | HanXRQChr02 | 4 | CH_han_249 | 4 | 6 | 0.000000120315 |
| Helianthus annuus | HanXRQChr13 | 4 | CH_han_397 | 3 | 3 | 0.0000134039 |
| Lonicera japonica | GWHAAZE00000003 | 4 | CH_lonja_67 | 7 | 9 | 6.28347e-17 |
| Lactuca sativa | Lsat_1_v8_lg_2 | 4 | CH_lsa_82 | 5 | 6 | 0.0000000000166839 |
| Medicago truncatula | chr4 | 4 | CH_mtr_280 | 4 | 9 | 0.0000000801286 |
| Punica granatum | NC_045130.1 | 4 | CH_pgr_10 | 10 | 21 | 6.62774e-23 |
| Papaver somniferum | NW_020620714.1 | 4 | CH_pso_204 | 4 | 6 | 0.0000000122166 |
| Phaseolus vulgaris | Chr05 | 4 | CH_pvu_206 | 3 | 4 | 0.0000220163 |
| Rosa chinensis | RcHm_v2.0_Chr7 | 4 | CH_rch_76 | 8 | 29 | 6.67435e-16 |
| Sechium edule | LG04 | 4 | CH_sed_113 | 4 | 9 | 0.00000121201 |
| Sequoiadendron giganteum | chr3 | 4 | CH_sgi_118 | 9 | 25 | 2.6893e-20 |
| Schrenkiella parvula | ch1-1 | 4 | CH_spa_105 | 3 | 5 | 0.0000422768 |
| Solanum tuberosum | ST4.03ch06 | 4 | CH_stu_150 | 5 | 10 | 0.00000000220853 |
| Trifolium pratense | Tp57577_TGAC_v2_LG4 | 4 | CH_tpr_255 | 3 | 8 | 0.000174903 |
| Vaccinium macrocarpon | chr3_Vaccinium_macrocarpon_Stevens_v1 | 4 | CH_vma_191 | 4 | 21 | 0.0000552776 |
| Vigna mungo | CM024079.1 | 4 | CH_vmu_61 | 4 | 5 | 0.0000000156789 |
| Vanilla planifolia | CM028161.1 | 4 | CH_vpl_285 | 3 | 8 | 0.000311192 |
Available child term results
| Ontology identifier | Description | Number of clusters |
|---|---|---|
| GO:0006990 | positive regulation of transcription from RNA polymerase II promoter involved in unfolded protein response | 6 |
| GO:1900103 | positive regulation of endoplasmic reticulum unfolded protein response | 2 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |