Functional clusters
Information
- Type Gene Ontology
- Description innate immune response-activating signal transduction
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Aethionema arabicum | LG-3 | 3 | CH_aar_224 | 3 | 4 | 0.000298526 |
| Arabidopsis lyrata | scaffold_3 | 3 | CH_aly_169 | 4 | 11 | 0.0000166678 |
| Beta vulgaris | Chr4_EL10_PGA_scaffold1 | 3 | CH_bvu_130 | 5 | 24 | 0.00000552976 |
| Camellia sinensis var. sinensis | Chr14 | 3 | CH_camsi_77 | 9 | 35 | 0.000000000000551296 |
| Carya illinoinensis | Chr04 | 3 | CH_cil_92 | 6 | 6 | 0.00000000000103086 |
| Eutrema salsugineum | scaffold_15 | 3 | CH_esa_215 | 5 | 52 | 0.000271958 |
| Fragaria x ananassa | Fvb7-4 | 3 | CH_fan_231 | 5 | 26 | 0.00000312869 |
| Gossypium hirsutum | A04 | 3 | CH_ghi_515 | 3 | 4 | 0.000244333 |
| Lotus japonicus | Contig00564 | 3 | CH_lja_367 | 3 | 5 | 0.000815931 |
| Lactuca sativa | Lsat_1_v8_lg_7 | 3 | CH_lsa_145 | 7 | 42 | 0.0000000145058 |
| Quercus lobata | 9 | 3 | CH_qlo_147 | 12 | 54 | 0.00000000000000209712 |
| Quercus lobata | 10 | 3 | CH_qlo_671 | 4 | 5 | 0.0000248777 |
| Theobroma cacao | Chromosome_7 | 3 | CH_tca_97 | 5 | 6 | 0.000000000969365 |
| Tarenaya hassleriana | NW_010966177.1 | 3 | CH_tha_31 | 6 | 18 | 0.00000000557659 |
| Vaccinium macrocarpon | chr6_Vaccinium_macrocarpon_Stevens_v1 | 3 | CH_vma_327 | 3 | 4 | 0.000402079 |
| Aethionema arabicum | LG-3 | 4 | CH_aar_224 | 3 | 4 | 0.000298526 |
| Arabidopsis lyrata | scaffold_3 | 4 | CH_aly_169 | 4 | 11 | 0.0000166678 |
| Beta vulgaris | Chr4_EL10_PGA_scaffold1 | 4 | CH_bvu_130 | 5 | 24 | 0.00000552976 |
| Camellia sinensis var. sinensis | Chr14 | 4 | CH_camsi_77 | 9 | 35 | 0.000000000000551296 |
| Carya illinoinensis | Chr04 | 4 | CH_cil_92 | 6 | 6 | 0.00000000000103086 |
| Eutrema salsugineum | scaffold_15 | 4 | CH_esa_215 | 5 | 52 | 0.000271958 |
| Fragaria x ananassa | Fvb7-4 | 4 | CH_fan_231 | 5 | 26 | 0.00000312869 |
| Gossypium hirsutum | A04 | 4 | CH_ghi_515 | 3 | 4 | 0.000244333 |
| Lotus japonicus | Contig00564 | 4 | CH_lja_367 | 3 | 5 | 0.000815931 |
| Lactuca sativa | Lsat_1_v8_lg_7 | 4 | CH_lsa_145 | 7 | 42 | 0.0000000145058 |
| Quercus lobata | 9 | 4 | CH_qlo_147 | 12 | 54 | 0.00000000000000209712 |
| Quercus lobata | 10 | 4 | CH_qlo_671 | 4 | 5 | 0.0000248777 |
| Theobroma cacao | Chromosome_7 | 4 | CH_tca_97 | 5 | 6 | 0.000000000969365 |
| Tarenaya hassleriana | NW_010966177.1 | 4 | CH_tha_31 | 6 | 18 | 0.00000000557659 |
| Vaccinium macrocarpon | chr6_Vaccinium_macrocarpon_Stevens_v1 | 4 | CH_vma_327 | 3 | 4 | 0.000402079 |
Available child term results
| Ontology identifier | Description | Number of clusters |
|---|---|---|
| GO:0002220 | innate immune response activating cell surface receptor signaling pathway | 16 |
| GO:0002752 | cell surface pattern recognition receptor signaling pathway | 4 |
| GO:0140426 | PAMP-triggered immunity signalling pathway | 2 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |