Functional clusters

Information

  • Type Gene Ontology
  • Description signal transduction

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Aquilegia oxysepala CHR07 3 CH_aox_202 16 62 0.000110822
Arabidopsis thaliana Chr2 3 CH_ath_357 15 60 0.0000316158
Brassica napus C07 3 CH_bna_343 9 15 0.0000130201
Citrus clementina scaffold_5 3 CH_ccl_207 9 10 0.000000878986
Medicago truncatula chr2 3 CH_mtr_387 7 7 0.00000328083
Quercus lobata 9 3 CH_qlo_538 15 35 0.00000173551
Solanum lycopersicum SL4.0ch02 3 CH_sly_207 9 10 0.000000633653
Solanum lycopersicum SL4.0ch02 3 CH_sly_284 8 9 0.0000114416
Aquilegia oxysepala CHR07 4 CH_aox_202 16 62 0.000110822
Arabidopsis thaliana Chr2 4 CH_ath_357 15 60 0.0000316158
Brassica napus C07 4 CH_bna_343 9 15 0.0000130201
Citrus clementina scaffold_5 4 CH_ccl_207 9 10 0.000000878986
Medicago truncatula chr2 4 CH_mtr_387 7 7 0.00000328083
Quercus lobata 9 4 CH_qlo_538 15 35 0.00000173551
Solanum lycopersicum SL4.0ch02 4 CH_sly_207 9 10 0.000000633653
Solanum lycopersicum SL4.0ch02 4 CH_sly_284 8 9 0.0000114416

Available child term results

Ontology identifier Description Number of clusters
GO:0000160 phosphorelay signal transduction system 24
GO:0002220 innate immune response activating cell surface receptor signaling pathway 16
GO:0002221 pattern recognition receptor signaling pathway 6
GO:0002752 cell surface pattern recognition receptor signaling pathway 4
GO:0002758 innate immune response-activating signal transduction 30
GO:0006983 ER overload response 10
GO:0006990 positive regulation of transcription from RNA polymerase II promoter involved in unfolded protein response 6
GO:0007094 mitotic spindle assembly checkpoint signaling 8
GO:0007095 mitotic G2 DNA damage checkpoint signaling 8
GO:0007166 cell surface receptor signaling pathway 18
GO:0007178 transmembrane receptor protein serine/threonine kinase signaling pathway 12
GO:0007186 G protein-coupled receptor signaling pathway 20
GO:0007205 protein kinase C-activating G protein-coupled receptor signaling pathway 10
GO:0007219 Notch signaling pathway 4
GO:0007264 small GTPase mediated signal transduction 10
GO:0009585 red, far-red light phototransduction 4
GO:0009734 auxin-activated signaling pathway 74
GO:0009736 cytokinin-activated signaling pathway 16
GO:0009738 abscisic acid-activated signaling pathway 10
GO:0009740 gibberellic acid mediated signaling pathway 6
GO:0009742 brassinosteroid mediated signaling pathway 2
GO:0009745 sucrose mediated signaling 28
GO:0009747 hexokinase-dependent signaling 6
GO:0009755 hormone-mediated signaling pathway 2
GO:0009785 blue light signaling pathway 2
GO:0009787 regulation of abscisic acid-activated signaling pathway 12
GO:0009788 negative regulation of abscisic acid-activated signaling pathway 6
GO:0009789 positive regulation of abscisic acid-activated signaling pathway 2
GO:0009862 systemic acquired resistance, salicylic acid mediated signaling pathway 12
GO:0009863 salicylic acid mediated signaling pathway 4
GO:0009864 induced systemic resistance, jasmonic acid mediated signaling pathway 8
GO:0009866 induced systemic resistance, ethylene mediated signaling pathway 8
GO:0009868 jasmonic acid and ethylene-dependent systemic resistance, jasmonic acid mediated signaling pathway 8
GO:0009873 ethylene-activated signaling pathway 216
GO:0009937 regulation of gibberellic acid mediated signaling pathway 8
GO:0009939 positive regulation of gibberellic acid mediated signaling pathway 2
GO:0009966 regulation of signal transduction 8
GO:0010018 far-red light signaling pathway 6
GO:0010104 regulation of ethylene-activated signaling pathway 20
GO:0010105 negative regulation of ethylene-activated signaling pathway 12
GO:0010315 auxin efflux 16
GO:0019722 calcium-mediated signaling 6
GO:0030845 phospholipase C-inhibiting G protein-coupled receptor signaling pathway 84
GO:0030968 endoplasmic reticulum unfolded protein response 70
GO:0031567 mitotic cell size control checkpoint signaling 6
GO:0031570 DNA integrity checkpoint signaling 4
GO:0031663 lipopolysaccharide-mediated signaling pathway 2
GO:0032008 positive regulation of TOR signaling 4
GO:0032012 regulation of ARF protein signal transduction 10
GO:0033314 mitotic DNA replication checkpoint signaling 16
GO:0033316 meiotic spindle assembly checkpoint signaling 2
GO:0034263 positive regulation of autophagy in response to ER overload 2
GO:0035024 negative regulation of Rho protein signal transduction 2
GO:0035556 intracellular signal transduction 22
GO:0043407 negative regulation of MAP kinase activity 2
GO:0048015 phosphatidylinositol-mediated signaling 14
GO:0048016 inositol phosphate-mediated signaling 2
GO:0060774 auxin mediated signaling pathway involved in phyllotactic patterning 2
GO:0062207 regulation of pattern recognition receptor signaling pathway 2
GO:0071588 hydrogen peroxide mediated signaling pathway 6
GO:0080036 regulation of cytokinin-activated signaling pathway 10
GO:0080037 negative regulation of cytokinin-activated signaling pathway 24
GO:0080038 positive regulation of cytokinin-activated signaling pathway 2
GO:0080151 positive regulation of salicylic acid mediated signaling pathway 2
GO:0090227 regulation of red or far-red light signaling pathway 4
GO:0090228 positive regulation of red or far-red light signaling pathway 14
GO:0090266 regulation of mitotic cell cycle spindle assembly checkpoint 2
GO:0106167 extracellular ATP signaling 2
GO:0140426 PAMP-triggered immunity signalling pathway 2
GO:1900103 positive regulation of endoplasmic reticulum unfolded protein response 2
GO:1900457 regulation of brassinosteroid mediated signaling pathway 6
GO:1900459 positive regulation of brassinosteroid mediated signaling pathway 38
GO:1901527 abscisic acid-activated signaling pathway involved in stomatal movement 16
GO:1901528 hydrogen peroxide mediated signaling pathway involved in stomatal movement 16
GO:1902531 regulation of intracellular signal transduction 2
GO:1902659 regulation of glucose mediated signaling pathway 4
GO:1904263 positive regulation of TORC1 signaling 4
GO:2000022 regulation of jasmonic acid mediated signaling pathway 18
GO:2000031 regulation of salicylic acid mediated signaling pathway 16

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001