Functional clusters

Information

  • Type Gene Ontology
  • Description positive regulation of biological process

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Camellia sinensis var. sinensis Chr10 3 CH_camsi_575 12 42 0.000126162
Malus domestica Chr09 3 CH_mdo_619 6 7 0.000390822
Sequoiadendron giganteum chr7 3 CH_sgi_316 15 27 0.00000000000778096
Camellia sinensis var. sinensis Chr10 4 CH_camsi_575 12 42 0.000126162
Malus domestica Chr09 4 CH_mdo_619 6 7 0.000390822
Sequoiadendron giganteum chr7 4 CH_sgi_316 15 27 0.00000000000778096

Available child term results

Ontology identifier Description Number of clusters
GO:0000288 nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay 2
GO:0000289 nuclear-transcribed mRNA poly(A) tail shortening 8
GO:0000290 deadenylation-dependent decapping of nuclear-transcribed mRNA 10
GO:0002220 innate immune response activating cell surface receptor signaling pathway 16
GO:0002253 activation of immune response 8
GO:0002684 positive regulation of immune system process 2
GO:0002752 cell surface pattern recognition receptor signaling pathway 4
GO:0002758 innate immune response-activating signal transduction 30
GO:0006990 positive regulation of transcription from RNA polymerase II promoter involved in unfolded protein response 6
GO:0008284 positive regulation of cell population proliferation 6
GO:0009789 positive regulation of abscisic acid-activated signaling pathway 2
GO:0009864 induced systemic resistance, jasmonic acid mediated signaling pathway 8
GO:0009866 induced systemic resistance, ethylene mediated signaling pathway 8
GO:0009891 positive regulation of biosynthetic process 2
GO:0009939 positive regulation of gibberellic acid mediated signaling pathway 2
GO:0009963 positive regulation of flavonoid biosynthetic process 6
GO:0010030 positive regulation of seed germination 2
GO:0010063 positive regulation of trichoblast fate specification 2
GO:0010116 positive regulation of abscisic acid biosynthetic process 6
GO:0010186 positive regulation of cellular defense response 6
GO:0010365 positive regulation of ethylene biosynthetic process 16
GO:0010372 positive regulation of gibberellin biosynthetic process 2
GO:0010455 positive regulation of cell fate commitment 2
GO:0010513 positive regulation of phosphatidylinositol biosynthetic process 2
GO:0010601 positive regulation of auxin biosynthetic process 2
GO:0010604 positive regulation of macromolecule metabolic process 6
GO:0010606 positive regulation of cytoplasmic mRNA processing body assembly 16
GO:0010628 positive regulation of gene expression 4
GO:0010726 positive regulation of hydrogen peroxide metabolic process 22
GO:0010729 positive regulation of hydrogen peroxide biosynthetic process 6
GO:0010845 positive regulation of reciprocal meiotic recombination 2
GO:0010922 positive regulation of phosphatase activity 12
GO:0010942 positive regulation of cell death 6
GO:0010971 positive regulation of G2/M transition of mitotic cell cycle 2
GO:0012502 induction of programmed cell death 2
GO:0031116 positive regulation of microtubule polymerization 4
GO:0031117 positive regulation of microtubule depolymerization 10
GO:0031325 positive regulation of cellular metabolic process 2
GO:0031328 positive regulation of cellular biosynthetic process 4
GO:0031542 positive regulation of anthocyanin biosynthetic process 2
GO:0031937 positive regulation of chromatin silencing 14
GO:0032008 positive regulation of TOR signaling 4
GO:0032147 activation of protein kinase activity 10
GO:0032212 positive regulation of telomere maintenance via telomerase 2
GO:0032786 positive regulation of DNA-templated transcription, elongation 8
GO:0032877 positive regulation of DNA endoreduplication 4
GO:0032968 positive regulation of transcription elongation from RNA polymerase II promoter 32
GO:0033184 positive regulation of histone ubiquitination 4
GO:0033674 positive regulation of kinase activity 6
GO:0034052 positive regulation of plant-type hypersensitive response 2
GO:0034263 positive regulation of autophagy in response to ER overload 2
GO:0034314 Arp2/3 complex-mediated actin nucleation 12
GO:0034758 positive regulation of iron ion transport 8
GO:0042753 positive regulation of circadian rhythm 6
GO:0043068 positive regulation of programmed cell death 4
GO:0045010 actin nucleation 2
GO:0045723 positive regulation of fatty acid biosynthetic process 6
GO:0045727 positive regulation of translation 18
GO:0045732 positive regulation of protein catabolic process 2
GO:0045739 positive regulation of DNA repair 4
GO:0045770 positive regulation of asymmetric cell division 2
GO:0045787 positive regulation of cell cycle 2
GO:0045815 positive regulation of gene expression, epigenetic 2
GO:0045834 positive regulation of lipid metabolic process 2
GO:0045876 positive regulation of sister chromatid cohesion 10
GO:0045893 positive regulation of transcription, DNA-templated 4
GO:0045901 positive regulation of translational elongation 18
GO:0045905 positive regulation of translational termination 2
GO:0045927 positive regulation of growth 14
GO:0045931 positive regulation of mitotic cell cycle 2
GO:0045943 positive regulation of transcription by RNA polymerase I 2
GO:0045944 positive regulation of transcription by RNA polymerase II 34
GO:0046622 positive regulation of organ growth 6
GO:0048026 positive regulation of mRNA splicing, via spliceosome 4
GO:0048255 mRNA stabilization 4
GO:0048522 positive regulation of cellular process 4
GO:0048584 positive regulation of response to stimulus 2
GO:0050778 positive regulation of immune response 6
GO:0051094 positive regulation of developmental process 6
GO:0051127 positive regulation of actin nucleation 2
GO:0051173 positive regulation of nitrogen compound metabolic process 8
GO:0051254 positive regulation of RNA metabolic process 4
GO:0051512 positive regulation of unidimensional cell growth 2
GO:0051571 positive regulation of histone H3-K4 methylation 8
GO:0051781 positive regulation of cell division 2
GO:0051841 positive regulation by host of cytolysis of symbiont cells 32
GO:0051928 positive regulation of calcium ion transport 10
GO:0051973 positive regulation of telomerase activity 14
GO:0060149 negative regulation of posttranscriptional gene silencing 2
GO:0060261 positive regulation of transcription initiation from RNA polymerase II promoter 16
GO:0060267 positive regulation of respiratory burst 2
GO:0061158 3'-UTR-mediated mRNA destabilization 4
GO:0070455 positive regulation of heme biosynthetic process 4
GO:0080038 positive regulation of cytokinin-activated signaling pathway 2
GO:0080040 positive regulation of cellular response to phosphate starvation 18
GO:0080151 positive regulation of salicylic acid mediated signaling pathway 2
GO:0090063 positive regulation of microtubule nucleation 4
GO:0090070 positive regulation of ribosome biogenesis 6
GO:0090228 positive regulation of red or far-red light signaling pathway 14
GO:0090309 positive regulation of DNA methylation-dependent heterochromatin assembly 2
GO:0090316 positive regulation of intracellular protein transport 2
GO:0140426 PAMP-triggered immunity signalling pathway 2
GO:1900036 positive regulation of cellular response to heat 2
GO:1900039 positive regulation of cellular response to hypoxia 4
GO:1900064 positive regulation of peroxisome organization 2
GO:1900103 positive regulation of endoplasmic reticulum unfolded protein response 2
GO:1900151 regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay 2
GO:1900367 positive regulation of defense response to insect 6
GO:1900369 negative regulation of RNA interference 4
GO:1900370 positive regulation of RNA interference 22
GO:1900386 positive regulation of flavonol biosynthetic process 4
GO:1900409 positive regulation of cellular response to oxidative stress 12
GO:1900426 positive regulation of defense response to bacterium 8
GO:1900459 positive regulation of brassinosteroid mediated signaling pathway 38
GO:1900486 positive regulation of isopentenyl diphosphate biosynthetic process, mevalonate pathway 8
GO:1900706 positive regulation of siderophore biosynthetic process 96
GO:1901002 positive regulation of response to salt stress 2
GO:1901333 positive regulation of lateral root development 4
GO:1901430 positive regulation of syringal lignin biosynthetic process 14
GO:1901485 positive regulation of transcription factor catabolic process 6
GO:1901529 positive regulation of anion channel activity 8
GO:1901537 positive regulation of DNA demethylation 18
GO:1901672 positive regulation of systemic acquired resistance 8
GO:1901800 positive regulation of proteasomal protein catabolic process 2
GO:1901959 positive regulation of cutin biosynthetic process 2
GO:1901969 positive regulation of polynucleotide 3'-phosphatase activity 2
GO:1902009 positive regulation of toxin transport 4
GO:1902290 positive regulation of defense response to oomycetes 22
GO:1902458 positive regulation of stomatal opening 2
GO:1902459 positive regulation of stem cell population maintenance 2
GO:1902466 positive regulation of histone H3-K27 trimethylation 2
GO:1902553 positive regulation of catalase activity 2
GO:1902584 positive regulation of response to water deprivation 2
GO:1902892 positive regulation of root hair elongation 2
GO:1902916 positive regulation of protein polyubiquitination 8
GO:1903099 positive regulation of CENP-A containing nucleosome assembly 6
GO:1903343 positive regulation of meiotic DNA double-strand break formation 2
GO:1903428 positive regulation of reactive oxygen species biosynthetic process 2
GO:1903527 positive regulation of membrane tubulation 2
GO:1903942 positive regulation of respiratory gaseous exchange 2
GO:1904143 positive regulation of carotenoid biosynthetic process 4
GO:1904263 positive regulation of TORC1 signaling 4
GO:1904294 positive regulation of ERAD pathway 12
GO:1904668 positive regulation of ubiquitin protein ligase activity 28
GO:1904964 positive regulation of phytol biosynthetic process 12
GO:1905157 positive regulation of photosynthesis 2
GO:1905168 positive regulation of double-strand break repair via homologous recombination 4
GO:1905516 positive regulation of fertilization 2
GO:1905885 positive regulation of triglyceride transport 4
GO:2000123 positive regulation of stomatal complex development 8
GO:2000234 positive regulation of rRNA processing 8
GO:2000306 positive regulation of photomorphogenesis 4
GO:2000541 positive regulation of protein geranylgeranylation 2
GO:2000617 positive regulation of histone H3-K9 acetylation 2
GO:2000636 positive regulation of primary miRNA processing 6
GO:2000685 positive regulation of cellular response to X-ray 2
GO:2000711 positive regulation of maintenance of meiotic sister chromatid cohesion, centromeric 2
GO:2000786 positive regulation of autophagosome assembly 2
GO:2001011 positive regulation of plant-type cell wall cellulose biosynthetic process 4
GO:2001280 positive regulation of unsaturated fatty acid biosynthetic process 2

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001