Functional clusters
Information
- Type Gene Ontology
- Description auxin-activated signaling pathway
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Arabidopsis thaliana | Chr5 | 3 | CH_ath_274 | 6 | 21 | 0.00000754317 |
| Brassica carinata | ChrC08 | 3 | CH_bca_1014 | 3 | 3 | 0.000969829 |
| Brassica carinata | ChrB07 | 3 | CH_bca_733 | 4 | 9 | 0.000261561 |
| Beta vulgaris | Chr9_EL10_PGA_scaffold8 | 3 | CH_bvu_37 | 7 | 8 | 0.00000000000400832 |
| Camellia sinensis var. sinensis | Chr6 | 3 | CH_camsi_2 | 30 | 77 | 2.52985e-49 |
| Camellia sinensis var. sinensis | Chr10 | 3 | CH_camsi_415 | 6 | 23 | 0.0000085889 |
| Citrus clementina | scaffold_3 | 3 | CH_ccl_142 | 5 | 5 | 0.0000000269064 |
| Carpinus fangiana | Cfa08 | 3 | CH_cfa_232 | 4 | 6 | 0.0000793464 |
| Carpinus fangiana | Cfa07 | 3 | CH_cfa_91 | 6 | 11 | 0.000000032327 |
| Davidia involucrata | GWHABJS00000005 | 3 | CH_din_86 | 5 | 5 | 0.0000000105661 |
| Durio zibethinus | NW_019168004.1 | 3 | CH_dzi_145 | 5 | 6 | 0.00000242512 |
| Erigeron canadensis | Conyza_canadensis_scaffold:1 | 3 | CH_eca_19 | 7 | 7 | 0.0000000000000191616 |
| Eucalyptus grandis | Chr07 | 3 | CH_egr_172 | 9 | 13 | 0.00000000000000181562 |
| Erythranthe guttata | scaffold_9 | 3 | CH_egut_45 | 11 | 19 | 0.00000000000000201497 |
| Gossypium hirsutum | D01 | 3 | CH_ghi_364 | 4 | 4 | 0.000012368 |
| Glycine max | Gm13 | 3 | CH_gma_177 | 5 | 6 | 0.000000294834 |
| Glycine max | Gm10 | 3 | CH_gma_35 | 9 | 12 | 0.00000000000000234218 |
| Gossypium raimondii | Chr02 | 3 | CH_gra_177 | 4 | 4 | 0.00000863176 |
| Helianthus annuus | HanXRQChr01 | 3 | CH_han_27 | 11 | 12 | 1.00961e-21 |
| Helianthus annuus | HanXRQChr04 | 3 | CH_han_57 | 8 | 8 | 0.00000000000000181783 |
| Lotus japonicus | chr3 | 3 | CH_lja_63 | 6 | 7 | 0.000000000967312 |
| Manihot esculenta | Chromosome04 | 3 | CH_mes_7 | 30 | 36 | 4.44923e-59 |
| Medicago truncatula | chr1 | 3 | CH_mtr_97 | 7 | 8 | 0.000000000000319526 |
| Punica granatum | NC_045128.1 | 3 | CH_pgr_39 | 8 | 8 | 0.0000000000000985531 |
| Papaver somniferum | NW_020628818.1 | 3 | CH_pso_361 | 4 | 5 | 0.00000708289 |
| Papaver somniferum | NC_039366.1 | 3 | CH_pso_402 | 4 | 6 | 0.0000212149 |
| Phaseolus vulgaris | Chr07 | 3 | CH_pvu_106 | 5 | 5 | 0.000000035062 |
| Quercus lobata | 10 | 3 | CH_qlo_474 | 5 | 5 | 0.000000339129 |
| Sequoiadendron giganteum | chr3 | 3 | CH_sgi_38 | 17 | 36 | 6.22326e-31 |
| Sequoiadendron giganteum | chr10 | 3 | CH_sgi_741 | 4 | 4 | 0.00000159487 |
| Solanum tuberosum | ST4.03ch03 | 3 | CH_stu_344 | 4 | 4 | 0.0000230993 |
| Solanum tuberosum | ST4.03ch03 | 3 | CH_stu_546 | 4 | 6 | 0.000343778 |
| Trifolium pratense | Tp57577_TGAC_v2_scaf_171 | 3 | CH_tpr_166 | 4 | 4 | 0.0000162122 |
| Tripterygium wilfordii | NC_052238.1 | 3 | CH_twi_2 | 23 | 47 | 3.92254e-37 |
| Tripterygium wilfordii | NC_052253.1 | 3 | CH_twi_218 | 4 | 5 | 0.0000871518 |
| Vitis vinifera | chr4 | 3 | CH_vvi_35 | 10 | 12 | 8.44865e-19 |
| Vitis vinifera | chr3 | 3 | CH_vvi_44 | 8 | 8 | 0.00000000000000101836 |
| Arabidopsis thaliana | Chr5 | 4 | CH_ath_274 | 6 | 21 | 0.00000754317 |
| Brassica carinata | ChrC08 | 4 | CH_bca_1014 | 3 | 3 | 0.000969829 |
| Brassica carinata | ChrB07 | 4 | CH_bca_733 | 4 | 9 | 0.000261561 |
| Beta vulgaris | Chr9_EL10_PGA_scaffold8 | 4 | CH_bvu_37 | 7 | 8 | 0.00000000000400832 |
| Camellia sinensis var. sinensis | Chr6 | 4 | CH_camsi_2 | 30 | 77 | 2.52985e-49 |
| Camellia sinensis var. sinensis | Chr10 | 4 | CH_camsi_415 | 6 | 23 | 0.0000085889 |
| Citrus clementina | scaffold_3 | 4 | CH_ccl_142 | 5 | 5 | 0.0000000269064 |
| Carpinus fangiana | Cfa08 | 4 | CH_cfa_232 | 4 | 6 | 0.0000793464 |
| Carpinus fangiana | Cfa07 | 4 | CH_cfa_91 | 6 | 11 | 0.000000032327 |
| Davidia involucrata | GWHABJS00000005 | 4 | CH_din_86 | 5 | 5 | 0.0000000105661 |
| Durio zibethinus | NW_019168004.1 | 4 | CH_dzi_145 | 5 | 6 | 0.00000242512 |
| Erigeron canadensis | Conyza_canadensis_scaffold:1 | 4 | CH_eca_19 | 7 | 7 | 0.0000000000000191616 |
| Eucalyptus grandis | Chr07 | 4 | CH_egr_172 | 9 | 13 | 0.00000000000000181562 |
| Erythranthe guttata | scaffold_9 | 4 | CH_egut_45 | 11 | 19 | 0.00000000000000201497 |
| Gossypium hirsutum | D01 | 4 | CH_ghi_364 | 4 | 4 | 0.000012368 |
| Glycine max | Gm13 | 4 | CH_gma_177 | 5 | 6 | 0.000000294834 |
| Glycine max | Gm10 | 4 | CH_gma_35 | 9 | 12 | 0.00000000000000234218 |
| Gossypium raimondii | Chr02 | 4 | CH_gra_177 | 4 | 4 | 0.00000863176 |
| Helianthus annuus | HanXRQChr01 | 4 | CH_han_27 | 11 | 12 | 1.00961e-21 |
| Helianthus annuus | HanXRQChr04 | 4 | CH_han_57 | 8 | 8 | 0.00000000000000181783 |
| Lotus japonicus | chr3 | 4 | CH_lja_63 | 6 | 7 | 0.000000000967312 |
| Manihot esculenta | Chromosome04 | 4 | CH_mes_7 | 30 | 36 | 4.44923e-59 |
| Medicago truncatula | chr1 | 4 | CH_mtr_97 | 7 | 8 | 0.000000000000319526 |
| Punica granatum | NC_045128.1 | 4 | CH_pgr_39 | 8 | 8 | 0.0000000000000985531 |
| Papaver somniferum | NW_020628818.1 | 4 | CH_pso_361 | 4 | 5 | 0.00000708289 |
| Papaver somniferum | NC_039366.1 | 4 | CH_pso_402 | 4 | 6 | 0.0000212149 |
| Phaseolus vulgaris | Chr07 | 4 | CH_pvu_106 | 5 | 5 | 0.000000035062 |
| Quercus lobata | 10 | 4 | CH_qlo_474 | 5 | 5 | 0.000000339129 |
| Sequoiadendron giganteum | chr3 | 4 | CH_sgi_38 | 17 | 36 | 6.22326e-31 |
| Sequoiadendron giganteum | chr10 | 4 | CH_sgi_741 | 4 | 4 | 0.00000159487 |
| Solanum tuberosum | ST4.03ch03 | 4 | CH_stu_344 | 4 | 4 | 0.0000230993 |
| Solanum tuberosum | ST4.03ch03 | 4 | CH_stu_546 | 4 | 6 | 0.000343778 |
| Trifolium pratense | Tp57577_TGAC_v2_scaf_171 | 4 | CH_tpr_166 | 4 | 4 | 0.0000162122 |
| Tripterygium wilfordii | NC_052238.1 | 4 | CH_twi_2 | 23 | 47 | 3.92254e-37 |
| Tripterygium wilfordii | NC_052253.1 | 4 | CH_twi_218 | 4 | 5 | 0.0000871518 |
| Vitis vinifera | chr4 | 4 | CH_vvi_35 | 10 | 12 | 8.44865e-19 |
| Vitis vinifera | chr3 | 4 | CH_vvi_44 | 8 | 8 | 0.00000000000000101836 |
Available child term results
| Ontology identifier | Description | Number of clusters |
|---|---|---|
| GO:0010315 | auxin efflux | 16 |
| GO:0060774 | auxin mediated signaling pathway involved in phyllotactic patterning | 2 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |