Functional clusters
Information
- Type Gene Ontology
- Description negative regulation of organ growth
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Aethionema arabicum | LG-6 | 3 | CH_aar_143 | 4 | 36 | 0.0000657193 |
| Arabidopsis lyrata | scaffold_8 | 3 | CH_aly_65 | 4 | 5 | 0.00000000308349 |
| Arabidopsis lyrata | scaffold_1 | 3 | CH_aly_92 | 4 | 9 | 0.0000000776197 |
| Arabidopsis thaliana | Chr1 | 3 | CH_ath_24 | 8 | 24 | 8.90599e-20 |
| Arabidopsis thaliana | Chr5 | 3 | CH_ath_313 | 3 | 6 | 0.0000167358 |
| Brassica carinata | ChrC05 | 3 | CH_bca_743 | 3 | 10 | 0.000300089 |
| Brassica napus | A09 | 3 | CH_bna_415 | 3 | 6 | 0.0000419399 |
| Brassica oleracea | C5 | 3 | CH_bol_262 | 3 | 8 | 0.0000609698 |
| Brassica rapa | A09 | 3 | CH_bra_157 | 3 | 6 | 0.0000309433 |
| Ceratophyllum demersum | 3 | 3 | CH_cde_2 | 12 | 15 | 1.38041e-30 |
| Cardamine hirsuta | Chr1 | 3 | CH_chi_12 | 9 | 15 | 8.97937e-23 |
| Carica papaya | supercontig_20 | 3 | CH_cpa_1 | 13 | 16 | 2.60454e-37 |
| Capsella rubella | scaffold_8 | 3 | CH_cru_172 | 3 | 3 | 0.00000654358 |
| Capsella rubella | scaffold_1 | 3 | CH_cru_5 | 9 | 12 | 1.23835e-23 |
| Eutrema salsugineum | scaffold_2 | 3 | CH_esa_116 | 3 | 3 | 0.00000487118 |
| Eutrema salsugineum | scaffold_5 | 3 | CH_esa_5 | 8 | 10 | 2.70935e-21 |
| Helianthus annuus | HanXRQChr12 | 3 | CH_han_303 | 3 | 3 | 0.000000640626 |
| Malus domestica | Chr12 | 3 | CH_mdo_268 | 3 | 3 | 0.000000785171 |
| Manihot esculenta | Chromosome07 | 3 | CH_mes_157 | 5 | 23 | 0.0000000540068 |
| Populus trichocarpa | Chr17 | 3 | CH_ptr_272 | 3 | 3 | 0.0000101431 |
| Populus trichocarpa | Chr09 | 3 | CH_ptr_92 | 5 | 5 | 0.00000000000355862 |
| Solanum lycopersicum | SL4.0ch10 | 3 | CH_sly_102 | 5 | 8 | 0.000000000401789 |
| Solanum lycopersicum | SL4.0ch04 | 3 | CH_sly_33 | 8 | 12 | 8.29464e-19 |
| Schrenkiella parvula | ch6-6 | 3 | CH_spa_27 | 4 | 4 | 0.0000000019989 |
| Schrenkiella parvula | ch1-1 | 3 | CH_spa_7 | 6 | 10 | 0.0000000000000714811 |
| Trochodendron aralioides | group7 | 3 | CH_tar_197 | 3 | 3 | 0.00000367659 |
| Theobroma cacao | Chromosome_2 | 3 | CH_tca_14 | 7 | 9 | 1.50159e-18 |
| Vanilla planifolia | CM028155.1 | 3 | CH_vpl_43 | 4 | 5 | 0.000000000762344 |
| Aethionema arabicum | LG-6 | 4 | CH_aar_143 | 4 | 36 | 0.0000657193 |
| Arabidopsis lyrata | scaffold_8 | 4 | CH_aly_65 | 4 | 5 | 0.00000000308349 |
| Arabidopsis lyrata | scaffold_1 | 4 | CH_aly_92 | 4 | 9 | 0.0000000776197 |
| Arabidopsis thaliana | Chr1 | 4 | CH_ath_24 | 8 | 24 | 8.90599e-20 |
| Arabidopsis thaliana | Chr5 | 4 | CH_ath_313 | 3 | 6 | 0.0000167358 |
| Brassica carinata | ChrC05 | 4 | CH_bca_743 | 3 | 10 | 0.000300089 |
| Brassica napus | A09 | 4 | CH_bna_415 | 3 | 6 | 0.0000419399 |
| Brassica oleracea | C5 | 4 | CH_bol_262 | 3 | 8 | 0.0000609698 |
| Brassica rapa | A09 | 4 | CH_bra_157 | 3 | 6 | 0.0000309433 |
| Ceratophyllum demersum | 3 | 4 | CH_cde_2 | 12 | 15 | 1.38041e-30 |
| Cardamine hirsuta | Chr1 | 4 | CH_chi_12 | 9 | 15 | 8.97937e-23 |
| Carica papaya | supercontig_20 | 4 | CH_cpa_1 | 13 | 16 | 2.60454e-37 |
| Capsella rubella | scaffold_8 | 4 | CH_cru_172 | 3 | 3 | 0.00000654358 |
| Capsella rubella | scaffold_1 | 4 | CH_cru_5 | 9 | 12 | 1.23835e-23 |
| Eutrema salsugineum | scaffold_2 | 4 | CH_esa_116 | 3 | 3 | 0.00000487118 |
| Eutrema salsugineum | scaffold_5 | 4 | CH_esa_5 | 8 | 10 | 2.70935e-21 |
| Helianthus annuus | HanXRQChr12 | 4 | CH_han_303 | 3 | 3 | 0.000000640626 |
| Malus domestica | Chr12 | 4 | CH_mdo_268 | 3 | 3 | 0.000000785171 |
| Manihot esculenta | Chromosome07 | 4 | CH_mes_157 | 5 | 23 | 0.0000000540068 |
| Populus trichocarpa | Chr17 | 4 | CH_ptr_272 | 3 | 3 | 0.0000101431 |
| Populus trichocarpa | Chr09 | 4 | CH_ptr_92 | 5 | 5 | 0.00000000000355862 |
| Solanum lycopersicum | SL4.0ch10 | 4 | CH_sly_102 | 5 | 8 | 0.000000000401789 |
| Solanum lycopersicum | SL4.0ch04 | 4 | CH_sly_33 | 8 | 12 | 8.29464e-19 |
| Schrenkiella parvula | ch6-6 | 4 | CH_spa_27 | 4 | 4 | 0.0000000019989 |
| Schrenkiella parvula | ch1-1 | 4 | CH_spa_7 | 6 | 10 | 0.0000000000000714811 |
| Trochodendron aralioides | group7 | 4 | CH_tar_197 | 3 | 3 | 0.00000367659 |
| Theobroma cacao | Chromosome_2 | 4 | CH_tca_14 | 7 | 9 | 1.50159e-18 |
| Vanilla planifolia | CM028155.1 | 4 | CH_vpl_43 | 4 | 5 | 0.000000000762344 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |