Functional clusters
Information
- Type Gene Ontology
- Description regulation of systemic acquired resistance
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Avicennia marina | ScioBoG_18778_HRSCAF_18863 | 3 | CH_ama_4 | 5 | 5 | 0.00000000000843693 |
| Aquilegia oxysepala | CHR03 | 3 | CH_aox_117 | 3 | 3 | 0.00000351194 |
| Amborella trichopoda | AmTr_v1.0_scaffold00079 | 3 | CH_atr_180 | 3 | 5 | 0.0000529678 |
| Brassica carinata | Contig655 | 3 | CH_bca_775 | 3 | 8 | 0.000323339 |
| Carya illinoinensis | Chr08 | 3 | CH_cil_309 | 3 | 3 | 0.0000259046 |
| Carya illinoinensis | Chr07 | 3 | CH_cil_310 | 3 | 3 | 0.0000259046 |
| Corchorus olitorius | AWUE01018165.1 | 3 | CH_col_34 | 3 | 3 | 0.000000128001 |
| Durio zibethinus | NW_019167893.1 | 3 | CH_dzi_174 | 3 | 3 | 0.00000837824 |
| Manihot esculenta | Chromosome01 | 3 | CH_mes_233 | 3 | 3 | 0.00000743899 |
| Nelumbo nucifera | chr4 | 3 | CH_nnu_59 | 4 | 4 | 0.0000000050128 |
| Petunia axillaris | Peaxi162Scf00382 | 3 | CH_pax_48 | 4 | 4 | 0.000000000747085 |
| Populus trichocarpa | Chr02 | 3 | CH_ptr_277 | 3 | 3 | 0.0000130297 |
| Quercus lobata | 12 | 3 | CH_qlo_332 | 4 | 4 | 0.00000000522305 |
| Sequoiadendron giganteum | chr7 | 3 | CH_sgi_1020 | 3 | 4 | 0.0000577818 |
| Sequoiadendron giganteum | HRSCAF_1 | 3 | CH_sgi_426 | 5 | 9 | 0.000000000756937 |
| Sequoiadendron giganteum | chr4 | 3 | CH_sgi_871 | 3 | 3 | 0.0000144529 |
| Theobroma cacao | Chromosome_1 | 3 | CH_tca_231 | 3 | 4 | 0.0000218763 |
| Tripterygium wilfordii | NC_052248.1 | 3 | CH_twi_155 | 3 | 3 | 0.00000532218 |
| Vigna mungo | CM024071.1 | 3 | CH_vmu_138 | 3 | 4 | 0.00000911573 |
| Avicennia marina | ScioBoG_18778_HRSCAF_18863 | 4 | CH_ama_4 | 5 | 5 | 0.00000000000843693 |
| Aquilegia oxysepala | CHR03 | 4 | CH_aox_117 | 3 | 3 | 0.00000351194 |
| Amborella trichopoda | AmTr_v1.0_scaffold00079 | 4 | CH_atr_180 | 3 | 5 | 0.0000529678 |
| Brassica carinata | Contig655 | 4 | CH_bca_775 | 3 | 8 | 0.000323339 |
| Carya illinoinensis | Chr08 | 4 | CH_cil_309 | 3 | 3 | 0.0000259046 |
| Carya illinoinensis | Chr07 | 4 | CH_cil_310 | 3 | 3 | 0.0000259046 |
| Corchorus olitorius | AWUE01018165.1 | 4 | CH_col_34 | 3 | 3 | 0.000000128001 |
| Durio zibethinus | NW_019167893.1 | 4 | CH_dzi_174 | 3 | 3 | 0.00000837824 |
| Manihot esculenta | Chromosome01 | 4 | CH_mes_233 | 3 | 3 | 0.00000743899 |
| Nelumbo nucifera | chr4 | 4 | CH_nnu_59 | 4 | 4 | 0.0000000050128 |
| Petunia axillaris | Peaxi162Scf00382 | 4 | CH_pax_48 | 4 | 4 | 0.000000000747085 |
| Populus trichocarpa | Chr02 | 4 | CH_ptr_277 | 3 | 3 | 0.0000130297 |
| Quercus lobata | 12 | 4 | CH_qlo_332 | 4 | 4 | 0.00000000522305 |
| Sequoiadendron giganteum | chr7 | 4 | CH_sgi_1020 | 3 | 4 | 0.0000577818 |
| Sequoiadendron giganteum | HRSCAF_1 | 4 | CH_sgi_426 | 5 | 9 | 0.000000000756937 |
| Sequoiadendron giganteum | chr4 | 4 | CH_sgi_871 | 3 | 3 | 0.0000144529 |
| Theobroma cacao | Chromosome_1 | 4 | CH_tca_231 | 3 | 4 | 0.0000218763 |
| Tripterygium wilfordii | NC_052248.1 | 4 | CH_twi_155 | 3 | 3 | 0.00000532218 |
| Vigna mungo | CM024071.1 | 4 | CH_vmu_138 | 3 | 4 | 0.00000911573 |
Available child term results
| Ontology identifier | Description | Number of clusters |
|---|---|---|
| GO:1901672 | positive regulation of systemic acquired resistance | 8 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |