Functional clusters
Information
- Type Gene Ontology
- Description regulation of seed dormancy process
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Aethionema arabicum | LG-4 | 3 | CH_aar_127 | 3 | 4 | 0.0000181714 |
| Aquilegia oxysepala | CHR01 | 3 | CH_aox_45 | 4 | 5 | 0.00000000382935 |
| Arabidopsis thaliana | Chr3 | 3 | CH_ath_375 | 3 | 9 | 0.0000470153 |
| Capsicum annuum | PGAv.1.6.scaffold370 | 3 | CH_can_274 | 3 | 6 | 0.0000584949 |
| Capsicum annuum | PGAv.1.6.scaffold529 | 3 | CH_can_275 | 3 | 6 | 0.0000584949 |
| Corylus avellana | 2 | 3 | CH_cav_142 | 4 | 10 | 0.000000866483 |
| Carica papaya | supercontig_12 | 3 | CH_cpa_33 | 4 | 5 | 0.00000000425214 |
| Chenopodium quinoa | C_Quinoa_Scaffold_3429 | 3 | CH_cqu_108 | 4 | 4 | 0.00000000233459 |
| Chenopodium quinoa | C_Quinoa_Scaffold_2088 | 3 | CH_cqu_248 | 3 | 3 | 0.00000518623 |
| Daucus carota | DCARv2_Chr5 | 3 | CH_dca_184 | 3 | 3 | 0.00000695578 |
| Daucus carota | DCARv2_Chr9 | 3 | CH_dca_400 | 3 | 10 | 0.000832134 |
| Eutrema salsugineum | scaffold_6 | 3 | CH_esa_69 | 4 | 7 | 0.0000000463696 |
| Helianthus annuus | HanXRQChr09 | 3 | CH_han_272 | 4 | 8 | 0.000000247741 |
| Helianthus annuus | HanXRQChr04 | 3 | CH_han_64 | 6 | 7 | 0.00000000000000511194 |
| Lupinus albus | Lalb_Chr16 | 3 | CH_lal_210 | 3 | 4 | 0.0000219724 |
| Lonicera japonica | GWHAAZE00000002 | 3 | CH_lonja_184 | 6 | 41 | 0.00000000298068 |
| Lonicera japonica | GWHAAZE00000001 | 3 | CH_lonja_413 | 3 | 5 | 0.0000612805 |
| Populus trichocarpa | Chr16 | 3 | CH_ptr_74 | 7 | 26 | 0.000000000000148788 |
| Quercus lobata | 9 | 3 | CH_qlo_350 | 5 | 14 | 0.00000000857526 |
| Rhododendron simsii | chr03 | 3 | CH_rsi_91 | 6 | 14 | 0.00000000000204564 |
| Solanum lycopersicum | SL4.0ch02 | 3 | CH_sly_133 | 4 | 6 | 0.00000000650325 |
| Solanum pennellii | Spenn-ch02 | 3 | CH_spe_104 | 4 | 6 | 0.0000000054032 |
| Solanum pennellii | Spenn-ch02 | 3 | CH_spe_47 | 5 | 7 | 0.0000000000018507 |
| Solanum tuberosum | ST4.03ch02 | 3 | CH_stu_168 | 4 | 6 | 0.0000000110165 |
| Solanum tuberosum | ST4.03ch02 | 3 | CH_stu_271 | 3 | 3 | 0.00000220596 |
| Tripterygium wilfordii | NC_052252.1 | 3 | CH_twi_136 | 5 | 35 | 0.0000022794 |
| Tripterygium wilfordii | NC_052245.1 | 3 | CH_twi_268 | 3 | 6 | 0.00030538 |
| Aethionema arabicum | LG-4 | 4 | CH_aar_127 | 3 | 4 | 0.0000181714 |
| Aquilegia oxysepala | CHR01 | 4 | CH_aox_45 | 4 | 5 | 0.00000000382935 |
| Arabidopsis thaliana | Chr3 | 4 | CH_ath_375 | 3 | 9 | 0.0000470153 |
| Capsicum annuum | PGAv.1.6.scaffold370 | 4 | CH_can_274 | 3 | 6 | 0.0000584949 |
| Capsicum annuum | PGAv.1.6.scaffold529 | 4 | CH_can_275 | 3 | 6 | 0.0000584949 |
| Corylus avellana | 2 | 4 | CH_cav_142 | 4 | 10 | 0.000000866483 |
| Carica papaya | supercontig_12 | 4 | CH_cpa_33 | 4 | 5 | 0.00000000425214 |
| Chenopodium quinoa | C_Quinoa_Scaffold_3429 | 4 | CH_cqu_108 | 4 | 4 | 0.00000000233459 |
| Chenopodium quinoa | C_Quinoa_Scaffold_2088 | 4 | CH_cqu_248 | 3 | 3 | 0.00000518623 |
| Daucus carota | DCARv2_Chr5 | 4 | CH_dca_184 | 3 | 3 | 0.00000695578 |
| Daucus carota | DCARv2_Chr9 | 4 | CH_dca_400 | 3 | 10 | 0.000832134 |
| Eutrema salsugineum | scaffold_6 | 4 | CH_esa_69 | 4 | 7 | 0.0000000463696 |
| Helianthus annuus | HanXRQChr09 | 4 | CH_han_272 | 4 | 8 | 0.000000247741 |
| Helianthus annuus | HanXRQChr04 | 4 | CH_han_64 | 6 | 7 | 0.00000000000000511194 |
| Lupinus albus | Lalb_Chr16 | 4 | CH_lal_210 | 3 | 4 | 0.0000219724 |
| Lonicera japonica | GWHAAZE00000002 | 4 | CH_lonja_184 | 6 | 41 | 0.00000000298068 |
| Lonicera japonica | GWHAAZE00000001 | 4 | CH_lonja_413 | 3 | 5 | 0.0000612805 |
| Populus trichocarpa | Chr16 | 4 | CH_ptr_74 | 7 | 26 | 0.000000000000148788 |
| Quercus lobata | 9 | 4 | CH_qlo_350 | 5 | 14 | 0.00000000857526 |
| Rhododendron simsii | chr03 | 4 | CH_rsi_91 | 6 | 14 | 0.00000000000204564 |
| Solanum lycopersicum | SL4.0ch02 | 4 | CH_sly_133 | 4 | 6 | 0.00000000650325 |
| Solanum pennellii | Spenn-ch02 | 4 | CH_spe_104 | 4 | 6 | 0.0000000054032 |
| Solanum pennellii | Spenn-ch02 | 4 | CH_spe_47 | 5 | 7 | 0.0000000000018507 |
| Solanum tuberosum | ST4.03ch02 | 4 | CH_stu_168 | 4 | 6 | 0.0000000110165 |
| Solanum tuberosum | ST4.03ch02 | 4 | CH_stu_271 | 3 | 3 | 0.00000220596 |
| Tripterygium wilfordii | NC_052252.1 | 4 | CH_twi_136 | 5 | 35 | 0.0000022794 |
| Tripterygium wilfordii | NC_052245.1 | 4 | CH_twi_268 | 3 | 6 | 0.00030538 |
Available child term results
| Ontology identifier | Description | Number of clusters |
|---|---|---|
| GO:1902039 | negative regulation of seed dormancy process | 6 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |