Functional clusters

Information

  • Type Gene Ontology
  • Description regulation of seed dormancy process

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Aethionema arabicum LG-4 3 CH_aar_127 3 4 0.0000181714
Aquilegia oxysepala CHR01 3 CH_aox_45 4 5 0.00000000382935
Arabidopsis thaliana Chr3 3 CH_ath_375 3 9 0.0000470153
Capsicum annuum PGAv.1.6.scaffold370 3 CH_can_274 3 6 0.0000584949
Capsicum annuum PGAv.1.6.scaffold529 3 CH_can_275 3 6 0.0000584949
Corylus avellana 2 3 CH_cav_142 4 10 0.000000866483
Carica papaya supercontig_12 3 CH_cpa_33 4 5 0.00000000425214
Chenopodium quinoa C_Quinoa_Scaffold_3429 3 CH_cqu_108 4 4 0.00000000233459
Chenopodium quinoa C_Quinoa_Scaffold_2088 3 CH_cqu_248 3 3 0.00000518623
Daucus carota DCARv2_Chr5 3 CH_dca_184 3 3 0.00000695578
Daucus carota DCARv2_Chr9 3 CH_dca_400 3 10 0.000832134
Eutrema salsugineum scaffold_6 3 CH_esa_69 4 7 0.0000000463696
Helianthus annuus HanXRQChr09 3 CH_han_272 4 8 0.000000247741
Helianthus annuus HanXRQChr04 3 CH_han_64 6 7 0.00000000000000511194
Lupinus albus Lalb_Chr16 3 CH_lal_210 3 4 0.0000219724
Lonicera japonica GWHAAZE00000002 3 CH_lonja_184 6 41 0.00000000298068
Lonicera japonica GWHAAZE00000001 3 CH_lonja_413 3 5 0.0000612805
Populus trichocarpa Chr16 3 CH_ptr_74 7 26 0.000000000000148788
Quercus lobata 9 3 CH_qlo_350 5 14 0.00000000857526
Rhododendron simsii chr03 3 CH_rsi_91 6 14 0.00000000000204564
Solanum lycopersicum SL4.0ch02 3 CH_sly_133 4 6 0.00000000650325
Solanum pennellii Spenn-ch02 3 CH_spe_104 4 6 0.0000000054032
Solanum pennellii Spenn-ch02 3 CH_spe_47 5 7 0.0000000000018507
Solanum tuberosum ST4.03ch02 3 CH_stu_168 4 6 0.0000000110165
Solanum tuberosum ST4.03ch02 3 CH_stu_271 3 3 0.00000220596
Tripterygium wilfordii NC_052252.1 3 CH_twi_136 5 35 0.0000022794
Tripterygium wilfordii NC_052245.1 3 CH_twi_268 3 6 0.00030538
Aethionema arabicum LG-4 4 CH_aar_127 3 4 0.0000181714
Aquilegia oxysepala CHR01 4 CH_aox_45 4 5 0.00000000382935
Arabidopsis thaliana Chr3 4 CH_ath_375 3 9 0.0000470153
Capsicum annuum PGAv.1.6.scaffold370 4 CH_can_274 3 6 0.0000584949
Capsicum annuum PGAv.1.6.scaffold529 4 CH_can_275 3 6 0.0000584949
Corylus avellana 2 4 CH_cav_142 4 10 0.000000866483
Carica papaya supercontig_12 4 CH_cpa_33 4 5 0.00000000425214
Chenopodium quinoa C_Quinoa_Scaffold_3429 4 CH_cqu_108 4 4 0.00000000233459
Chenopodium quinoa C_Quinoa_Scaffold_2088 4 CH_cqu_248 3 3 0.00000518623
Daucus carota DCARv2_Chr5 4 CH_dca_184 3 3 0.00000695578
Daucus carota DCARv2_Chr9 4 CH_dca_400 3 10 0.000832134
Eutrema salsugineum scaffold_6 4 CH_esa_69 4 7 0.0000000463696
Helianthus annuus HanXRQChr09 4 CH_han_272 4 8 0.000000247741
Helianthus annuus HanXRQChr04 4 CH_han_64 6 7 0.00000000000000511194
Lupinus albus Lalb_Chr16 4 CH_lal_210 3 4 0.0000219724
Lonicera japonica GWHAAZE00000002 4 CH_lonja_184 6 41 0.00000000298068
Lonicera japonica GWHAAZE00000001 4 CH_lonja_413 3 5 0.0000612805
Populus trichocarpa Chr16 4 CH_ptr_74 7 26 0.000000000000148788
Quercus lobata 9 4 CH_qlo_350 5 14 0.00000000857526
Rhododendron simsii chr03 4 CH_rsi_91 6 14 0.00000000000204564
Solanum lycopersicum SL4.0ch02 4 CH_sly_133 4 6 0.00000000650325
Solanum pennellii Spenn-ch02 4 CH_spe_104 4 6 0.0000000054032
Solanum pennellii Spenn-ch02 4 CH_spe_47 5 7 0.0000000000018507
Solanum tuberosum ST4.03ch02 4 CH_stu_168 4 6 0.0000000110165
Solanum tuberosum ST4.03ch02 4 CH_stu_271 3 3 0.00000220596
Tripterygium wilfordii NC_052252.1 4 CH_twi_136 5 35 0.0000022794
Tripterygium wilfordii NC_052245.1 4 CH_twi_268 3 6 0.00030538

Available child term results

Ontology identifier Description Number of clusters
GO:1902039 negative regulation of seed dormancy process 6

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001