Functional clusters

Information

  • Type Gene Ontology
  • Description ethylene-activated signaling pathway

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Acer truncatum chr5 3 CH_acertr_520 3 3 0.000936199
Acer truncatum chr4 3 CH_acertr_521 3 3 0.000936199
Acer truncatum chr1 3 CH_acertr_522 3 3 0.000936199
Acer truncatum chr5 3 CH_acertr_90 5 5 0.00000000911169
Arabidopsis lyrata scaffold_3 3 CH_aly_349 3 3 0.000963534
Amaranthus hybridus AmaHy_arrow1_Scaffold_4 3 CH_amhyb_219 3 3 0.000873247
Amborella trichopoda AmTr_v1.0_scaffold00010 3 CH_atr_336 3 3 0.000807692
Brassica carinata ChrB04 3 CH_bca_800 4 8 0.000402202
Camellia sinensis var. sinensis Chr1 3 CH_camsi_163 8 29 0.0000000027001
Camellia sinensis var. sinensis Chr5 3 CH_camsi_553 4 6 0.0000851077
Camellia sinensis var. sinensis Chr14 3 CH_camsi_554 4 6 0.0000851077
Cannabis sativa NC_044373.1 3 CH_cansat_148 4 4 0.00000346834
Cannabis sativa NC_044371.1 3 CH_cansat_153 5 11 0.0000050227
Capsicum annuum PGAv.1.6.scaffold656 3 CH_can_101 7 14 0.00000000079653
Capsicum annuum PGAv.1.6.scaffold1473 3 CH_can_136 5 5 0.0000000181582
Cicer arietinum L. Ca_LG3_v3 3 CH_car_73 4 5 0.000018023
Corylus avellana 8 3 CH_cav_112 5 6 0.000000157097
Corylus avellana 4 3 CH_cav_175 4 4 0.00000671728
Corylus avellana 9 3 CH_cav_90 6 10 0.000000021079
Citrus clementina scaffold_3 3 CH_ccl_145 7 19 0.0000000322788
Citrus clementina scaffold_3 3 CH_ccl_147 5 5 0.0000000378649
Citrus clementina scaffold_3 3 CH_ccl_43 8 8 0.00000000000000277401
Carpinus fangiana Cfa05 3 CH_cfa_338 3 3 0.000819816
Carpinus fangiana Cfa05 3 CH_cfa_339 3 3 0.000819816
Carya illinoinensis Chr11 3 CH_cil_329 4 5 0.0000611529
Corchorus olitorius AWUE01020791.1 3 CH_col_54 4 8 0.0000379577
Daucus carota DCARv2_Chr4 3 CH_dca_132 6 14 0.000000358949
Durio zibethinus NW_019167893.1 3 CH_dzi_168 4 4 0.0000070913
Durio zibethinus NW_019167893.1 3 CH_dzi_169 4 4 0.0000070913
Erigeron canadensis Conyza_canadensis_scaffold:2 3 CH_eca_132 5 7 0.000000220328
Erigeron canadensis Conyza_canadensis_scaffold:6 3 CH_eca_183 4 4 0.00000358704
Erigeron canadensis Conyza_canadensis_scaffold:4 3 CH_eca_298 4 7 0.000124654
Fragaria x ananassa Fvb7-2 3 CH_fan_326 4 5 0.000034865
Fragaria x ananassa Fvb7-2 3 CH_fan_327 4 5 0.000034865
Fragaria x ananassa Fvb2-3 3 CH_fan_328 4 5 0.000034865
Fragaria x ananassa Fvb7-1 3 CH_fan_434 4 7 0.000242954
Fragaria x ananassa Fvb2-4 3 CH_fan_435 4 7 0.000242954
Fragaria x ananassa Fvb2-2 3 CH_fan_54 6 6 0.0000000000551061
Fragaria x ananassa Fvb2-1 3 CH_fan_76 6 7 0.000000000384815
Fragaria vesca Fvb2 3 CH_fve_103 5 5 0.00000000680177
Fragaria vesca Fvb7 3 CH_fve_267 4 7 0.0000836047
Fragaria vesca Fvb4 3 CH_fve_379 3 3 0.000841772
Gossypium hirsutum D09 3 CH_ghi_373 4 4 0.0000218358
Gossypium hirsutum D08 3 CH_ghi_374 4 4 0.0000218358
Gossypium hirsutum A07 3 CH_ghi_71 8 8 0.00000000000000604411
Gossypium hirsutum D07 3 CH_ghi_98 7 7 0.00000000000148908
Glycine max Gm03 3 CH_gma_139 6 9 0.0000000322981
Glycine max Gm10 3 CH_gma_260 4 4 0.0000203186
Glycine max Gm19 3 CH_gma_261 4 4 0.0000203186
Glycine max Gm03 3 CH_gma_262 4 4 0.0000203186
Glycine max Gm09 3 CH_gma_535 5 19 0.000984059
Glycine max Gm13 3 CH_gma_63 7 9 0.0000000000603809
Gossypium raimondii Chr04 3 CH_gra_187 4 4 0.0000174526
Gossypium raimondii Chr06 3 CH_gra_188 4 4 0.0000174526
Gossypium raimondii Chr01 3 CH_gra_36 8 8 0.0000000000000074404
Helianthus annuus HanXRQChr04 3 CH_han_257 6 12 0.000000140487
Helianthus annuus HanXRQChr16 3 CH_han_371 7 37 0.00000539567
Helianthus annuus HanXRQChr14 3 CH_han_391 4 4 0.0000109745
Helianthus annuus HanXRQChr09 3 CH_han_409 5 11 0.0000187466
Hydrangea macrophylla Hma1.2p1_0267F.1 3 CH_hma_278 3 3 0.000433646
Lupinus albus Lalb_Chr02 3 CH_lal_196 4 4 0.0000125996
Lotus japonicus chr5 3 CH_lja_52 10 43 0.000000000246626
Lactuca sativa Lsat_1_v8_lg_3 3 CH_lsa_310 5 12 0.0000283173
Medicago truncatula chr7 3 CH_mtr_239 6 11 0.0000000128423
Medicago truncatula chr1 3 CH_mtr_48 10 16 1.33315e-17
Medicago truncatula chr1 3 CH_mtr_71 8 10 0.00000000000000990909
Nelumbo nucifera chr3 3 CH_nnu_308 3 3 0.00071054
Nelumbo nucifera chr1 3 CH_nnu_57 5 5 0.00000000450119
Nicotiana tabacum Nitab4.5_0001088 3 CH_nta_53 4 4 0.00000456112
Oryza sativa ssp. japonica chr03 3 CH_osa_323 4 7 0.000130423
Petunia axillaris Peaxi162Scf00078 3 CH_pax_216 4 6 0.0000744905
Petunia axillaris Peaxi162Scf00475 3 CH_pax_36 6 6 0.0000000000624423
Prunus persica Pp02 3 CH_ppe_169 5 5 0.0000000193476
Pisum sativum chr3LG5 3 CH_psa_170 4 5 0.000012265
Pisum sativum chr6LG2 3 CH_psa_254 5 20 0.000101798
Populus trichocarpa Chr14 3 CH_ptr_181 5 5 0.0000000462736
Populus trichocarpa Chr02 3 CH_ptr_275 4 4 0.0000111182
Phaseolus vulgaris Chr01 3 CH_pvu_114 5 5 0.0000000816637
Phaseolus vulgaris Chr07 3 CH_pvu_156 5 7 0.00000170098
Phaseolus vulgaris Chr10 3 CH_pvu_198 4 4 0.0000167122
Phaseolus vulgaris Chr07 3 CH_pvu_349 4 7 0.000578031
Rosa chinensis RcHm_v2.0_Chr6 3 CH_rch_134 6 6 0.00000000000343824
Rosa chinensis RcHm_v2.0_Chr1 3 CH_rch_227 5 6 0.0000000104359
Salvia bowleyana GWHASIU00000008 3 CH_sbo_160 5 6 0.0000000224865
Salvia bowleyana GWHASIU00000003 3 CH_sbo_179 5 7 0.0000000785456
Salvia bowleyana GWHASIU00000007 3 CH_sbo_473 3 3 0.000651881
Salix brachista GWHAAZH00000002 3 CH_sbr_191 4 4 0.00000935194
Salix brachista GWHAAZH00000003 3 CH_sbr_78 7 14 0.00000000205476
Sequoiadendron giganteum chr10 3 CH_sgi_415 7 14 0.000000000374717
Solanum lycopersicum SL4.0ch01 3 CH_sly_118 6 8 0.0000000031305
Solanum pennellii Spenn-ch01 3 CH_spe_235 4 5 0.0000140508
Solanum tuberosum ST4.03ch12 3 CH_stu_184 5 5 0.0000000266851
Solanum tuberosum ST4.03ch02 3 CH_stu_278 5 9 0.00000332168
Solanum tuberosum ST4.03ch01 3 CH_stu_92 8 13 0.00000000000156083
Trochodendron aralioides group15 3 CH_tar_141 5 6 0.000000280274
Theobroma cacao Chromosome_1 3 CH_tca_206 4 4 0.00000408388
Theobroma cacao Chromosome_1 3 CH_tca_229 4 5 0.000020363
Trifolium pratense Tp57577_TGAC_v2_LG1 3 CH_tpr_248 5 18 0.000137881
Tripterygium wilfordii NC_052243.1 3 CH_twi_106 5 5 0.000000105175
Tripterygium wilfordii NC_052241.1 3 CH_twi_181 4 4 0.0000215441
Tripterygium wilfordii NC_052248.1 3 CH_twi_225 4 5 0.000107297
Tripterygium wilfordii NC_052249.1 3 CH_twi_84 8 26 0.0000000171031
Vaccinium macrocarpon chr7_Vaccinium_macrocarpon_Stevens_v1 3 CH_vma_51 6 6 0.0000000000588676
Vigna mungo CM024071.1 3 CH_vmu_120 5 8 0.00000224153
Vigna mungo CM024078.1 3 CH_vmu_140 4 4 0.0000097794
Vigna mungo CM024072.1 3 CH_vmu_262 5 18 0.000331304
Vigna mungo CM024070.1 3 CH_vmu_73 5 5 0.0000000404447
Vitis vinifera chr7 3 CH_vvi_203 4 4 0.00000539091
Acer truncatum chr5 4 CH_acertr_520 3 3 0.000936199
Acer truncatum chr4 4 CH_acertr_521 3 3 0.000936199
Acer truncatum chr1 4 CH_acertr_522 3 3 0.000936199
Acer truncatum chr5 4 CH_acertr_90 5 5 0.00000000911169
Arabidopsis lyrata scaffold_3 4 CH_aly_349 3 3 0.000963534
Amaranthus hybridus AmaHy_arrow1_Scaffold_4 4 CH_amhyb_219 3 3 0.000873247
Amborella trichopoda AmTr_v1.0_scaffold00010 4 CH_atr_336 3 3 0.000807692
Brassica carinata ChrB04 4 CH_bca_800 4 8 0.000402202
Camellia sinensis var. sinensis Chr1 4 CH_camsi_163 8 29 0.0000000027001
Camellia sinensis var. sinensis Chr5 4 CH_camsi_553 4 6 0.0000851077
Camellia sinensis var. sinensis Chr14 4 CH_camsi_554 4 6 0.0000851077
Cannabis sativa NC_044373.1 4 CH_cansat_148 4 4 0.00000346834
Cannabis sativa NC_044371.1 4 CH_cansat_153 5 11 0.0000050227
Capsicum annuum PGAv.1.6.scaffold656 4 CH_can_101 7 14 0.00000000079653
Capsicum annuum PGAv.1.6.scaffold1473 4 CH_can_136 5 5 0.0000000181582
Cicer arietinum L. Ca_LG3_v3 4 CH_car_73 4 5 0.000018023
Corylus avellana 8 4 CH_cav_112 5 6 0.000000157097
Corylus avellana 4 4 CH_cav_175 4 4 0.00000671728
Corylus avellana 9 4 CH_cav_90 6 10 0.000000021079
Citrus clementina scaffold_3 4 CH_ccl_145 7 19 0.0000000322788
Citrus clementina scaffold_3 4 CH_ccl_147 5 5 0.0000000378649
Citrus clementina scaffold_3 4 CH_ccl_43 8 8 0.00000000000000277401
Carpinus fangiana Cfa05 4 CH_cfa_338 3 3 0.000819816
Carpinus fangiana Cfa05 4 CH_cfa_339 3 3 0.000819816
Carya illinoinensis Chr11 4 CH_cil_329 4 5 0.0000611529
Corchorus olitorius AWUE01020791.1 4 CH_col_54 4 8 0.0000379577
Daucus carota DCARv2_Chr4 4 CH_dca_132 6 14 0.000000358949
Durio zibethinus NW_019167893.1 4 CH_dzi_168 4 4 0.0000070913
Durio zibethinus NW_019167893.1 4 CH_dzi_169 4 4 0.0000070913
Erigeron canadensis Conyza_canadensis_scaffold:2 4 CH_eca_132 5 7 0.000000220328
Erigeron canadensis Conyza_canadensis_scaffold:6 4 CH_eca_183 4 4 0.00000358704
Erigeron canadensis Conyza_canadensis_scaffold:4 4 CH_eca_298 4 7 0.000124654
Fragaria x ananassa Fvb7-2 4 CH_fan_326 4 5 0.000034865
Fragaria x ananassa Fvb7-2 4 CH_fan_327 4 5 0.000034865
Fragaria x ananassa Fvb2-3 4 CH_fan_328 4 5 0.000034865
Fragaria x ananassa Fvb7-1 4 CH_fan_434 4 7 0.000242954
Fragaria x ananassa Fvb2-4 4 CH_fan_435 4 7 0.000242954
Fragaria x ananassa Fvb2-2 4 CH_fan_54 6 6 0.0000000000551061
Fragaria x ananassa Fvb2-1 4 CH_fan_76 6 7 0.000000000384815
Fragaria vesca Fvb2 4 CH_fve_103 5 5 0.00000000680177
Fragaria vesca Fvb7 4 CH_fve_267 4 7 0.0000836047
Fragaria vesca Fvb4 4 CH_fve_379 3 3 0.000841772
Gossypium hirsutum D09 4 CH_ghi_373 4 4 0.0000218358
Gossypium hirsutum D08 4 CH_ghi_374 4 4 0.0000218358
Gossypium hirsutum A07 4 CH_ghi_71 8 8 0.00000000000000604411
Gossypium hirsutum D07 4 CH_ghi_98 7 7 0.00000000000148908
Glycine max Gm03 4 CH_gma_139 6 9 0.0000000322981
Glycine max Gm10 4 CH_gma_260 4 4 0.0000203186
Glycine max Gm19 4 CH_gma_261 4 4 0.0000203186
Glycine max Gm03 4 CH_gma_262 4 4 0.0000203186
Glycine max Gm09 4 CH_gma_535 5 19 0.000984059
Glycine max Gm13 4 CH_gma_63 7 9 0.0000000000603809
Gossypium raimondii Chr04 4 CH_gra_187 4 4 0.0000174526
Gossypium raimondii Chr06 4 CH_gra_188 4 4 0.0000174526
Gossypium raimondii Chr01 4 CH_gra_36 8 8 0.0000000000000074404
Helianthus annuus HanXRQChr04 4 CH_han_257 6 12 0.000000140487
Helianthus annuus HanXRQChr16 4 CH_han_371 7 37 0.00000539567
Helianthus annuus HanXRQChr14 4 CH_han_391 4 4 0.0000109745
Helianthus annuus HanXRQChr09 4 CH_han_409 5 11 0.0000187466
Hydrangea macrophylla Hma1.2p1_0267F.1 4 CH_hma_278 3 3 0.000433646
Lupinus albus Lalb_Chr02 4 CH_lal_196 4 4 0.0000125996
Lotus japonicus chr5 4 CH_lja_52 10 43 0.000000000246626
Lactuca sativa Lsat_1_v8_lg_3 4 CH_lsa_310 5 12 0.0000283173
Medicago truncatula chr7 4 CH_mtr_239 6 11 0.0000000128423
Medicago truncatula chr1 4 CH_mtr_48 10 16 1.33315e-17
Medicago truncatula chr1 4 CH_mtr_71 8 10 0.00000000000000990909
Nelumbo nucifera chr3 4 CH_nnu_308 3 3 0.00071054
Nelumbo nucifera chr1 4 CH_nnu_57 5 5 0.00000000450119
Nicotiana tabacum Nitab4.5_0001088 4 CH_nta_53 4 4 0.00000456112
Oryza sativa ssp. japonica chr03 4 CH_osa_323 4 7 0.000130423
Petunia axillaris Peaxi162Scf00078 4 CH_pax_216 4 6 0.0000744905
Petunia axillaris Peaxi162Scf00475 4 CH_pax_36 6 6 0.0000000000624423
Prunus persica Pp02 4 CH_ppe_169 5 5 0.0000000193476
Pisum sativum chr3LG5 4 CH_psa_170 4 5 0.000012265
Pisum sativum chr6LG2 4 CH_psa_254 5 20 0.000101798
Populus trichocarpa Chr14 4 CH_ptr_181 5 5 0.0000000462736
Populus trichocarpa Chr02 4 CH_ptr_275 4 4 0.0000111182
Phaseolus vulgaris Chr01 4 CH_pvu_114 5 5 0.0000000816637
Phaseolus vulgaris Chr07 4 CH_pvu_156 5 7 0.00000170098
Phaseolus vulgaris Chr10 4 CH_pvu_198 4 4 0.0000167122
Phaseolus vulgaris Chr07 4 CH_pvu_349 4 7 0.000578031
Rosa chinensis RcHm_v2.0_Chr6 4 CH_rch_134 6 6 0.00000000000343824
Rosa chinensis RcHm_v2.0_Chr1 4 CH_rch_227 5 6 0.0000000104359
Salvia bowleyana GWHASIU00000008 4 CH_sbo_160 5 6 0.0000000224865
Salvia bowleyana GWHASIU00000003 4 CH_sbo_179 5 7 0.0000000785456
Salvia bowleyana GWHASIU00000007 4 CH_sbo_473 3 3 0.000651881
Salix brachista GWHAAZH00000002 4 CH_sbr_191 4 4 0.00000935194
Salix brachista GWHAAZH00000003 4 CH_sbr_78 7 14 0.00000000205476
Sequoiadendron giganteum chr10 4 CH_sgi_415 7 14 0.000000000374717
Solanum lycopersicum SL4.0ch01 4 CH_sly_118 6 8 0.0000000031305
Solanum pennellii Spenn-ch01 4 CH_spe_235 4 5 0.0000140508
Solanum tuberosum ST4.03ch12 4 CH_stu_184 5 5 0.0000000266851
Solanum tuberosum ST4.03ch02 4 CH_stu_278 5 9 0.00000332168
Solanum tuberosum ST4.03ch01 4 CH_stu_92 8 13 0.00000000000156083
Trochodendron aralioides group15 4 CH_tar_141 5 6 0.000000280274
Theobroma cacao Chromosome_1 4 CH_tca_206 4 4 0.00000408388
Theobroma cacao Chromosome_1 4 CH_tca_229 4 5 0.000020363
Trifolium pratense Tp57577_TGAC_v2_LG1 4 CH_tpr_248 5 18 0.000137881
Tripterygium wilfordii NC_052243.1 4 CH_twi_106 5 5 0.000000105175
Tripterygium wilfordii NC_052241.1 4 CH_twi_181 4 4 0.0000215441
Tripterygium wilfordii NC_052248.1 4 CH_twi_225 4 5 0.000107297
Tripterygium wilfordii NC_052249.1 4 CH_twi_84 8 26 0.0000000171031
Vaccinium macrocarpon chr7_Vaccinium_macrocarpon_Stevens_v1 4 CH_vma_51 6 6 0.0000000000588676
Vigna mungo CM024071.1 4 CH_vmu_120 5 8 0.00000224153
Vigna mungo CM024078.1 4 CH_vmu_140 4 4 0.0000097794
Vigna mungo CM024072.1 4 CH_vmu_262 5 18 0.000331304
Vigna mungo CM024070.1 4 CH_vmu_73 5 5 0.0000000404447
Vitis vinifera chr7 4 CH_vvi_203 4 4 0.00000539091

Available child term results

Ontology identifier Description Number of clusters
GO:0009866 induced systemic resistance, ethylene mediated signaling pathway 8
GO:0010104 regulation of ethylene-activated signaling pathway 20
GO:0010105 negative regulation of ethylene-activated signaling pathway 12

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001