Functional clusters
Information
- Type Gene Ontology
- Description regulation of early endosome to late endosome transport
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Acer truncatum | chr7 | 3 | CH_acertr_320 | 2 | 2 | 0.000070497 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.01 | 3 | CH_arhy_35 | 10 | 50 | 1.12276e-23 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.11 | 3 | CH_arhy_415 | 3 | 6 | 0.0000150509 |
| Ceratophyllum demersum | 4 | 3 | CH_cde_194 | 3 | 24 | 0.000660656 |
| Ceratophyllum demersum | 5 | 3 | CH_cde_27 | 4 | 8 | 0.00000000361951 |
| Carica papaya | supercontig_23 | 3 | CH_cpa_20 | 4 | 7 | 0.0000000000902123 |
| Fragaria vesca | Fvb1 | 3 | CH_fve_299 | 2 | 2 | 0.00017673 |
| Gossypium hirsutum | A06 | 3 | CH_ghi_537 | 2 | 2 | 0.000267016 |
| Hydrangea macrophylla | Hma1.2p1_0245F.1 | 3 | CH_hma_203 | 2 | 2 | 0.000111086 |
| Sequoiadendron giganteum | chr1 | 3 | CH_sgi_88 | 7 | 7 | 3.79049e-23 |
| Sapria himalayana | scaffold5_19632047 | 3 | CH_shi_65 | 3 | 6 | 0.0000000980824 |
| Selenicereus undatus | Scaffold_33679 | 3 | CH_sun_105 | 2 | 2 | 0.0000726639 |
| Utricularia gibba | unitig_22 | 3 | CH_ugi_88 | 2 | 2 | 0.0000820479 |
| Vanilla planifolia | CM028156.1 | 3 | CH_vpl_58 | 3 | 3 | 0.00000000818945 |
| Vitis vinifera | chr11 | 3 | CH_vvi_278 | 2 | 2 | 0.000076063 |
| Acer truncatum | chr7 | 4 | CH_acertr_320 | 2 | 2 | 0.000070497 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.01 | 4 | CH_arhy_35 | 10 | 50 | 1.12276e-23 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.11 | 4 | CH_arhy_415 | 3 | 6 | 0.0000150509 |
| Ceratophyllum demersum | 4 | 4 | CH_cde_194 | 3 | 24 | 0.000660656 |
| Ceratophyllum demersum | 5 | 4 | CH_cde_27 | 4 | 8 | 0.00000000361951 |
| Carica papaya | supercontig_23 | 4 | CH_cpa_20 | 4 | 7 | 0.0000000000902123 |
| Fragaria vesca | Fvb1 | 4 | CH_fve_299 | 2 | 2 | 0.00017673 |
| Gossypium hirsutum | A06 | 4 | CH_ghi_537 | 2 | 2 | 0.000267016 |
| Hydrangea macrophylla | Hma1.2p1_0245F.1 | 4 | CH_hma_203 | 2 | 2 | 0.000111086 |
| Sequoiadendron giganteum | chr1 | 4 | CH_sgi_88 | 7 | 7 | 3.79049e-23 |
| Sapria himalayana | scaffold5_19632047 | 4 | CH_shi_65 | 3 | 6 | 0.0000000980824 |
| Selenicereus undatus | Scaffold_33679 | 4 | CH_sun_105 | 2 | 2 | 0.0000726639 |
| Utricularia gibba | unitig_22 | 4 | CH_ugi_88 | 2 | 2 | 0.0000820479 |
| Vanilla planifolia | CM028156.1 | 4 | CH_vpl_58 | 3 | 3 | 0.00000000818945 |
| Vitis vinifera | chr11 | 4 | CH_vvi_278 | 2 | 2 | 0.000076063 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |