Functional clusters
Information
- Type Gene Ontology
- Description negative regulation of defense response to bacterium
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Actinidia chinensis | Lachesis_group3 | 3 | CH_ach_155 | 3 | 4 | 0.000149251 |
| Camellia sinensis var. sinensis | Chr8 | 3 | CH_camsi_74 | 7 | 20 | 0.000000000000378859 |
| Chenopodium quinoa | C_Quinoa_Scaffold_1828 | 3 | CH_cqu_326 | 3 | 3 | 0.0000415605 |
| Davidia involucrata | GWHABJS00000016 | 3 | CH_din_164 | 4 | 8 | 0.00000239382 |
| Durio zibethinus | NW_019168037.1 | 3 | CH_dzi_122 | 4 | 6 | 0.000000607349 |
| Durio zibethinus | NW_019167926.1 | 3 | CH_dzi_253 | 3 | 4 | 0.000170584 |
| Eucalyptus grandis | Chr05 | 3 | CH_egr_136 | 8 | 12 | 5.30225e-17 |
| Eucalyptus grandis | Chr11 | 3 | CH_egr_858 | 3 | 5 | 0.000632973 |
| Fragaria x ananassa | Fvb3-1 | 3 | CH_fan_471 | 3 | 5 | 0.000437704 |
| Fragaria vesca | Fvb3 | 3 | CH_fve_141 | 4 | 7 | 0.00000022778 |
| Malus domestica | Chr10 | 3 | CH_mdo_259 | 4 | 7 | 0.000000639778 |
| Olea europaea | chr1 | 3 | CH_oeu_124 | 3 | 3 | 0.0000125017 |
| Populus trichocarpa | Chr06 | 3 | CH_ptr_6 | 16 | 22 | 5.32122e-39 |
| Salix brachista | GWHAAZH00000006 | 3 | CH_sbr_107 | 4 | 4 | 0.0000000236211 |
| Trochodendron aralioides | group9 | 3 | CH_tar_52 | 5 | 5 | 0.0000000000938101 |
| Theobroma cacao | Chromosome_10 | 3 | CH_tca_126 | 4 | 4 | 0.0000000241331 |
| Tripterygium wilfordii | NC_052252.1 | 3 | CH_twi_124 | 4 | 5 | 0.000000506302 |
| Vitis vinifera | chrUn | 3 | CH_vvi_358 | 3 | 6 | 0.000350643 |
| Actinidia chinensis | Lachesis_group3 | 4 | CH_ach_155 | 3 | 4 | 0.000149251 |
| Camellia sinensis var. sinensis | Chr8 | 4 | CH_camsi_74 | 7 | 20 | 0.000000000000378859 |
| Chenopodium quinoa | C_Quinoa_Scaffold_1828 | 4 | CH_cqu_326 | 3 | 3 | 0.0000415605 |
| Davidia involucrata | GWHABJS00000016 | 4 | CH_din_164 | 4 | 8 | 0.00000239382 |
| Durio zibethinus | NW_019168037.1 | 4 | CH_dzi_122 | 4 | 6 | 0.000000607349 |
| Durio zibethinus | NW_019167926.1 | 4 | CH_dzi_253 | 3 | 4 | 0.000170584 |
| Eucalyptus grandis | Chr05 | 4 | CH_egr_136 | 8 | 12 | 5.30225e-17 |
| Eucalyptus grandis | Chr11 | 4 | CH_egr_858 | 3 | 5 | 0.000632973 |
| Fragaria x ananassa | Fvb3-1 | 4 | CH_fan_471 | 3 | 5 | 0.000437704 |
| Fragaria vesca | Fvb3 | 4 | CH_fve_141 | 4 | 7 | 0.00000022778 |
| Malus domestica | Chr10 | 4 | CH_mdo_259 | 4 | 7 | 0.000000639778 |
| Olea europaea | chr1 | 4 | CH_oeu_124 | 3 | 3 | 0.0000125017 |
| Populus trichocarpa | Chr06 | 4 | CH_ptr_6 | 16 | 22 | 5.32122e-39 |
| Salix brachista | GWHAAZH00000006 | 4 | CH_sbr_107 | 4 | 4 | 0.0000000236211 |
| Trochodendron aralioides | group9 | 4 | CH_tar_52 | 5 | 5 | 0.0000000000938101 |
| Theobroma cacao | Chromosome_10 | 4 | CH_tca_126 | 4 | 4 | 0.0000000241331 |
| Tripterygium wilfordii | NC_052252.1 | 4 | CH_twi_124 | 4 | 5 | 0.000000506302 |
| Vitis vinifera | chrUn | 4 | CH_vvi_358 | 3 | 6 | 0.000350643 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |