Functional clusters

Information

  • Type Gene Ontology
  • Description negative regulation of cellular process

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Magnolia biondii Chr19 3 CH_mbi_522 9 41 0.000289053
Selenicereus undatus Scaffold_33678 3 CH_sun_131 9 32 0.000204665
Magnolia biondii Chr19 4 CH_mbi_522 9 41 0.000289053
Selenicereus undatus Scaffold_33678 4 CH_sun_131 9 32 0.000204665

Available child term results

Ontology identifier Description Number of clusters
GO:0000122 negative regulation of transcription by RNA polymerase II 14
GO:0000183 rDNA heterochromatin assembly 16
GO:0000288 nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay 2
GO:0000289 nuclear-transcribed mRNA poly(A) tail shortening 8
GO:0000290 deadenylation-dependent decapping of nuclear-transcribed mRNA 10
GO:0006342 chromatin silencing 16
GO:0006346 DNA methylation-dependent heterochromatin assembly 6
GO:0006348 chromatin silencing at telomere 6
GO:0007094 mitotic spindle assembly checkpoint signaling 8
GO:0007095 mitotic G2 DNA damage checkpoint signaling 8
GO:0008285 negative regulation of cell population proliferation 12
GO:0009788 negative regulation of abscisic acid-activated signaling pathway 6
GO:0010105 negative regulation of ethylene-activated signaling pathway 12
GO:0010205 photoinhibition 6
GO:0010366 negative regulation of ethylene biosynthetic process 4
GO:0010466 negative regulation of peptidase activity 14
GO:0010507 negative regulation of autophagy 2
GO:0010730 negative regulation of hydrogen peroxide biosynthetic process 2
GO:0010951 negative regulation of endopeptidase activity 28
GO:0010964 regulation of heterochromatin assembly by small RNA 4
GO:0031324 negative regulation of cellular metabolic process 2
GO:0031508 pericentric heterochromatin assembly 18
GO:0031567 mitotic cell size control checkpoint signaling 6
GO:0031570 DNA integrity checkpoint signaling 4
GO:0031935 regulation of chromatin silencing 8
GO:0031937 positive regulation of chromatin silencing 14
GO:0032055 negative regulation of translation in response to stress 2
GO:0032269 negative regulation of cellular protein metabolic process 2
GO:0032876 negative regulation of DNA endoreduplication 2
GO:0033234 negative regulation of protein sumoylation 6
GO:0033314 mitotic DNA replication checkpoint signaling 16
GO:0033316 meiotic spindle assembly checkpoint signaling 2
GO:0034051 negative regulation of plant-type hypersensitive response 2
GO:0035024 negative regulation of Rho protein signal transduction 2
GO:0035278 miRNA mediated inhibition of translation 56
GO:0043066 negative regulation of apoptotic process 6
GO:0043069 negative regulation of programmed cell death 4
GO:0043407 negative regulation of MAP kinase activity 2
GO:0045014 carbon catabolite repression of transcription by glucose 2
GO:0045839 negative regulation of mitotic nuclear division 4
GO:0045841 negative regulation of mitotic metaphase/anaphase transition 2
GO:0045892 negative regulation of transcription, DNA-templated 8
GO:0045910 negative regulation of DNA recombination 2
GO:0048255 mRNA stabilization 4
GO:0050732 negative regulation of peptidyl-tyrosine phosphorylation 2
GO:0051511 negative regulation of unidimensional cell growth 8
GO:0051572 negative regulation of histone H3-K4 methylation 2
GO:0051573 negative regulation of histone H3-K9 methylation 2
GO:0060149 negative regulation of posttranscriptional gene silencing 2
GO:0060195 negative regulation of antisense RNA transcription 2
GO:0060567 negative regulation of DNA-templated transcription, termination 2
GO:0061158 3'-UTR-mediated mRNA destabilization 4
GO:0061866 negative regulation of histone H3-S10 phosphorylation 2
GO:0070829 heterochromatin maintenance 4
GO:0070919 production of siRNA involved in chromatin silencing by small RNA 8
GO:0080037 negative regulation of cytokinin-activated signaling pathway 24
GO:0080149 sucrose induced translational repression 2
GO:0090241 negative regulation of histone H4 acetylation 2
GO:0090266 regulation of mitotic cell cycle spindle assembly checkpoint 2
GO:0090309 positive regulation of DNA methylation-dependent heterochromatin assembly 2
GO:0090344 negative regulation of cell aging 8
GO:0090356 negative regulation of auxin metabolic process 14
GO:0090359 negative regulation of abscisic acid biosynthetic process 4
GO:1900035 negative regulation of cellular response to heat 2
GO:1900070 negative regulation of cellular hyperosmotic salinity response 16
GO:1900151 regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay 2
GO:1900186 negative regulation of clathrin-dependent endocytosis 8
GO:1900364 negative regulation of mRNA polyadenylation 10
GO:1900369 negative regulation of RNA interference 4
GO:1901017 negative regulation of potassium ion transmembrane transporter activity 10
GO:1901181 negative regulation of cellular response to caffeine 2
GO:1901347 negative regulation of secondary cell wall biogenesis 8
GO:1901799 negative regulation of proteasomal protein catabolic process 2
GO:1901918 negative regulation of exoribonuclease activity 2
GO:1901997 negative regulation of indoleacetic acid biosynthetic process via tryptophan 4
GO:1902457 negative regulation of stomatal opening 8
GO:1903427 negative regulation of reactive oxygen species biosynthetic process 22
GO:1903647 negative regulation of chlorophyll catabolic process 10
GO:1904667 negative regulation of ubiquitin protein ligase activity 8
GO:1905183 negative regulation of protein serine/threonine phosphatase activity 2
GO:1905642 negative regulation of DNA methylation 10
GO:1905775 negative regulation of DNA helicase activity 6
GO:2000042 negative regulation of double-strand break repair via homologous recombination 4
GO:2000083 negative regulation of L-ascorbic acid biosynthetic process 12
GO:2000104 negative regulation of DNA-dependent DNA replication 6
GO:2000113 negative regulation of cellular macromolecule biosynthetic process 18
GO:2000117 negative regulation of cysteine-type endopeptidase activity 2
GO:2000134 negative regulation of G1/S transition of mitotic cell cycle 2
GO:2000143 negative regulation of DNA-templated transcription, initiation 48
GO:2000378 negative regulation of reactive oxygen species metabolic process 2
GO:2000469 negative regulation of peroxidase activity 2
GO:2000905 negative regulation of starch metabolic process 6
GO:2001007 negative regulation of cellulose biosynthetic process 34

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001