Functional clusters
Information
- Type Gene Ontology
- Description regulation of defense response to oomycetes
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Amaranthus hybridus | AmaHy_arrow1_Scaffold_12 | 3 | CH_amhyb_18 | 4 | 4 | 0.00000000000178948 |
| Arabidopsis thaliana | Chr3 | 3 | CH_ath_65 | 4 | 12 | 0.0000000000349166 |
| Camellia sinensis var. sinensis | Chr5 | 3 | CH_camsi_146 | 4 | 9 | 0.000000000546558 |
| Cannabis sativa | NC_044377.1 | 3 | CH_cansat_202 | 3 | 38 | 0.0000545004 |
| Capsicum annuum | PGAv.1.6.scaffold575 | 3 | CH_can_413 | 2 | 4 | 0.000495622 |
| Citrus clementina | scaffold_2 | 3 | CH_ccl_21 | 9 | 29 | 2.91168e-23 |
| Carya illinoinensis | Chr02 | 3 | CH_cil_137 | 4 | 6 | 0.000000000160727 |
| Carya illinoinensis | Chr02 | 3 | CH_cil_525 | 2 | 2 | 0.000929742 |
| Capsella rubella | scaffold_3 | 3 | CH_cru_49 | 4 | 6 | 0.0000000000175896 |
| Durio zibethinus | NW_019168270.1 | 3 | CH_dzi_91 | 3 | 5 | 0.0000000322225 |
| Eucalyptus grandis | Chr11 | 3 | CH_egr_35 | 10 | 19 | 5.80671e-29 |
| Fragaria x ananassa | Fvb7-1 | 3 | CH_fan_150 | 3 | 7 | 0.00000017974 |
| Fragaria x ananassa | Fvb6-1 | 3 | CH_fan_229 | 3 | 11 | 0.00000296505 |
| Helianthus annuus | HanXRQChr15 | 3 | CH_han_99 | 4 | 4 | 0.00000000000259684 |
| Lactuca sativa | Lsat_1_v8_lg_1 | 3 | CH_lsa_174 | 5 | 47 | 0.0000000631439 |
| Malus domestica | Chr09 | 3 | CH_mdo_48 | 7 | 69 | 0.0000000000000114216 |
| Populus trichocarpa | Chr12 | 3 | CH_ptr_13 | 13 | 47 | 1.99059e-26 |
| Quercus lobata | 3 | 3 | CH_qlo_185 | 6 | 19 | 0.000000000000383475 |
| Tripterygium wilfordii | NC_052252.1 | 3 | CH_twi_160 | 3 | 5 | 0.00000770015 |
| Tripterygium wilfordii | NC_052232.1 | 3 | CH_twi_300 | 3 | 17 | 0.000522385 |
| Amaranthus hybridus | AmaHy_arrow1_Scaffold_12 | 4 | CH_amhyb_18 | 4 | 4 | 0.00000000000178948 |
| Arabidopsis thaliana | Chr3 | 4 | CH_ath_65 | 4 | 12 | 0.0000000000349166 |
| Camellia sinensis var. sinensis | Chr5 | 4 | CH_camsi_146 | 4 | 9 | 0.000000000546558 |
| Cannabis sativa | NC_044377.1 | 4 | CH_cansat_202 | 3 | 38 | 0.0000545004 |
| Capsicum annuum | PGAv.1.6.scaffold575 | 4 | CH_can_413 | 2 | 4 | 0.000495622 |
| Citrus clementina | scaffold_2 | 4 | CH_ccl_21 | 9 | 29 | 2.91168e-23 |
| Carya illinoinensis | Chr02 | 4 | CH_cil_137 | 4 | 6 | 0.000000000160727 |
| Carya illinoinensis | Chr02 | 4 | CH_cil_525 | 2 | 2 | 0.000929742 |
| Capsella rubella | scaffold_3 | 4 | CH_cru_49 | 4 | 6 | 0.0000000000175896 |
| Durio zibethinus | NW_019168270.1 | 4 | CH_dzi_91 | 3 | 5 | 0.0000000322225 |
| Eucalyptus grandis | Chr11 | 4 | CH_egr_35 | 10 | 19 | 5.80671e-29 |
| Fragaria x ananassa | Fvb7-1 | 4 | CH_fan_150 | 3 | 7 | 0.00000017974 |
| Fragaria x ananassa | Fvb6-1 | 4 | CH_fan_229 | 3 | 11 | 0.00000296505 |
| Helianthus annuus | HanXRQChr15 | 4 | CH_han_99 | 4 | 4 | 0.00000000000259684 |
| Lactuca sativa | Lsat_1_v8_lg_1 | 4 | CH_lsa_174 | 5 | 47 | 0.0000000631439 |
| Malus domestica | Chr09 | 4 | CH_mdo_48 | 7 | 69 | 0.0000000000000114216 |
| Populus trichocarpa | Chr12 | 4 | CH_ptr_13 | 13 | 47 | 1.99059e-26 |
| Quercus lobata | 3 | 4 | CH_qlo_185 | 6 | 19 | 0.000000000000383475 |
| Tripterygium wilfordii | NC_052252.1 | 4 | CH_twi_160 | 3 | 5 | 0.00000770015 |
| Tripterygium wilfordii | NC_052232.1 | 4 | CH_twi_300 | 3 | 17 | 0.000522385 |
Available child term results
| Ontology identifier | Description | Number of clusters |
|---|---|---|
| GO:1902289 | negative regulation of defense response to oomycetes | 4 |
| GO:1902290 | positive regulation of defense response to oomycetes | 22 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |