Functional clusters
Information
- Type Gene Ontology
- Description regulation of amino acid export
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Acer truncatum | chr12 | 3 | CH_acertr_64 | 5 | 21 | 0.000000000473901 |
| Amaranthus hybridus | AmaHy_arrow1_Scaffold_16 | 3 | CH_amhyb_62 | 3 | 3 | 0.000000595202 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.14 | 3 | CH_arhy_582 | 2 | 2 | 0.000299383 |
| Beta vulgaris | Chr2_EL10_PGA_scaffold6 | 3 | CH_bvu_241 | 2 | 2 | 0.00049675 |
| Camellia sinensis var. sinensis | Chr15 | 3 | CH_camsi_688 | 2 | 2 | 0.000275128 |
| Cannabis sativa | NC_044379.1 | 3 | CH_cansat_311 | 2 | 2 | 0.000393985 |
| Citrus clementina | scaffold_6 | 3 | CH_ccl_427 | 2 | 2 | 0.000820311 |
| Carpinus fangiana | Cfa03 | 3 | CH_cfa_105 | 3 | 3 | 0.0000000860393 |
| Carya illinoinensis | Chr03 | 3 | CH_cil_219 | 3 | 3 | 0.000000484091 |
| Chenopodium quinoa | C_Quinoa_Scaffold_1189 | 3 | CH_cqu_308 | 3 | 9 | 0.0000237438 |
| Eucalyptus grandis | Chr10 | 3 | CH_egr_182 | 5 | 5 | 0.00000000000000492906 |
| Fragaria vesca | Fvb6 | 3 | CH_fve_333 | 2 | 2 | 0.000353461 |
| Hydrangea macrophylla | Hma1.2p1_0588F.1 | 3 | CH_hma_303 | 2 | 2 | 0.000666519 |
| Lactuca sativa | Lsat_1_v8_lg_4 | 3 | CH_lsa_233 | 3 | 3 | 0.00000144258 |
| Malus domestica | Chr17 | 3 | CH_mdo_709 | 2 | 2 | 0.000796344 |
| Malus domestica | Chr09 | 3 | CH_mdo_710 | 2 | 2 | 0.000796344 |
| Manihot esculenta | Chromosome01 | 3 | CH_mes_213 | 3 | 4 | 0.00000268424 |
| Prunus persica | Pp03 | 3 | CH_ppe_430 | 2 | 2 | 0.000447577 |
| Pisum sativum | chr3LG5 | 3 | CH_psa_106 | 4 | 18 | 0.00000016389 |
| Pisum sativum | chr1LG6 | 3 | CH_psa_132 | 3 | 4 | 0.00000137124 |
| Populus trichocarpa | Chr17 | 3 | CH_ptr_120 | 4 | 4 | 0.000000000191187 |
| Populus trichocarpa | Chr04 | 3 | CH_ptr_121 | 4 | 4 | 0.000000000191187 |
| Quercus lobata | CM012294 | 3 | CH_qlo_424 | 3 | 3 | 0.0000000799683 |
| Rosa chinensis | RcHm_v2.0_Chr2 | 3 | CH_rch_379 | 3 | 7 | 0.00000291935 |
| Salix brachista | GWHAAZH00000017 | 3 | CH_sbr_149 | 3 | 3 | 0.000000500331 |
| Salix brachista | GWHAAZH00000004 | 3 | CH_sbr_150 | 3 | 3 | 0.000000500331 |
| Simmondsia chinensis | GWHAASQ00000010 | 3 | CH_sci_274 | 2 | 2 | 0.000851426 |
| Sequoiadendron giganteum | chr11 | 3 | CH_sgi_28 | 13 | 29 | 4.38534e-35 |
| Solanum lycopersicum | SL4.0ch02 | 3 | CH_sly_101 | 4 | 5 | 0.000000000382137 |
| Solanum pennellii | Spenn-ch02 | 3 | CH_spe_140 | 3 | 3 | 0.000000166188 |
| Solanum tuberosum | ST4.03ch02 | 3 | CH_stu_135 | 4 | 5 | 0.000000000423878 |
| Theobroma cacao | Chromosome_4 | 3 | CH_tca_150 | 3 | 3 | 0.000000160923 |
| Acer truncatum | chr12 | 4 | CH_acertr_64 | 5 | 21 | 0.000000000473901 |
| Amaranthus hybridus | AmaHy_arrow1_Scaffold_16 | 4 | CH_amhyb_62 | 3 | 3 | 0.000000595202 |
| Arachis hypogaea | arahy.Tifrunner.gnm1.Arahy.14 | 4 | CH_arhy_582 | 2 | 2 | 0.000299383 |
| Beta vulgaris | Chr2_EL10_PGA_scaffold6 | 4 | CH_bvu_241 | 2 | 2 | 0.00049675 |
| Camellia sinensis var. sinensis | Chr15 | 4 | CH_camsi_688 | 2 | 2 | 0.000275128 |
| Cannabis sativa | NC_044379.1 | 4 | CH_cansat_311 | 2 | 2 | 0.000393985 |
| Citrus clementina | scaffold_6 | 4 | CH_ccl_427 | 2 | 2 | 0.000820311 |
| Carpinus fangiana | Cfa03 | 4 | CH_cfa_105 | 3 | 3 | 0.0000000860393 |
| Carya illinoinensis | Chr03 | 4 | CH_cil_219 | 3 | 3 | 0.000000484091 |
| Chenopodium quinoa | C_Quinoa_Scaffold_1189 | 4 | CH_cqu_308 | 3 | 9 | 0.0000237438 |
| Eucalyptus grandis | Chr10 | 4 | CH_egr_182 | 5 | 5 | 0.00000000000000492906 |
| Fragaria vesca | Fvb6 | 4 | CH_fve_333 | 2 | 2 | 0.000353461 |
| Hydrangea macrophylla | Hma1.2p1_0588F.1 | 4 | CH_hma_303 | 2 | 2 | 0.000666519 |
| Lactuca sativa | Lsat_1_v8_lg_4 | 4 | CH_lsa_233 | 3 | 3 | 0.00000144258 |
| Malus domestica | Chr17 | 4 | CH_mdo_709 | 2 | 2 | 0.000796344 |
| Malus domestica | Chr09 | 4 | CH_mdo_710 | 2 | 2 | 0.000796344 |
| Manihot esculenta | Chromosome01 | 4 | CH_mes_213 | 3 | 4 | 0.00000268424 |
| Prunus persica | Pp03 | 4 | CH_ppe_430 | 2 | 2 | 0.000447577 |
| Pisum sativum | chr3LG5 | 4 | CH_psa_106 | 4 | 18 | 0.00000016389 |
| Pisum sativum | chr1LG6 | 4 | CH_psa_132 | 3 | 4 | 0.00000137124 |
| Populus trichocarpa | Chr17 | 4 | CH_ptr_120 | 4 | 4 | 0.000000000191187 |
| Populus trichocarpa | Chr04 | 4 | CH_ptr_121 | 4 | 4 | 0.000000000191187 |
| Quercus lobata | CM012294 | 4 | CH_qlo_424 | 3 | 3 | 0.0000000799683 |
| Rosa chinensis | RcHm_v2.0_Chr2 | 4 | CH_rch_379 | 3 | 7 | 0.00000291935 |
| Salix brachista | GWHAAZH00000017 | 4 | CH_sbr_149 | 3 | 3 | 0.000000500331 |
| Salix brachista | GWHAAZH00000004 | 4 | CH_sbr_150 | 3 | 3 | 0.000000500331 |
| Simmondsia chinensis | GWHAASQ00000010 | 4 | CH_sci_274 | 2 | 2 | 0.000851426 |
| Sequoiadendron giganteum | chr11 | 4 | CH_sgi_28 | 13 | 29 | 4.38534e-35 |
| Solanum lycopersicum | SL4.0ch02 | 4 | CH_sly_101 | 4 | 5 | 0.000000000382137 |
| Solanum pennellii | Spenn-ch02 | 4 | CH_spe_140 | 3 | 3 | 0.000000166188 |
| Solanum tuberosum | ST4.03ch02 | 4 | CH_stu_135 | 4 | 5 | 0.000000000423878 |
| Theobroma cacao | Chromosome_4 | 4 | CH_tca_150 | 3 | 3 | 0.000000160923 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |