Functional clusters
Information
- Type Gene Ontology
- Description positive regulation of brassinosteroid mediated signaling pathway
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Aethionema arabicum | LG-7 | 3 | CH_aar_10 | 8 | 10 | 3.26327e-20 |
| Arabidopsis lyrata | scaffold_5 | 3 | CH_aly_101 | 4 | 4 | 0.000000272845 |
| Arabidopsis lyrata | scaffold_4 | 3 | CH_aly_31 | 6 | 6 | 0.000000000000728229 |
| Arabidopsis lyrata | scaffold_3 | 3 | CH_aly_318 | 3 | 4 | 0.000647546 |
| Arabidopsis lyrata | scaffold_7 | 3 | CH_aly_63 | 5 | 6 | 0.00000000269788 |
| Arabidopsis thaliana | Chr4 | 3 | CH_ath_224 | 5 | 38 | 0.00000187304 |
| Brassica carinata | Contig365 | 3 | CH_bca_157 | 5 | 11 | 0.0000000116119 |
| Brassica carinata | ChrB01 | 3 | CH_bca_188 | 4 | 4 | 0.000000033719 |
| Brassica carinata | Contig593 | 3 | CH_bca_813 | 3 | 5 | 0.000443811 |
| Brassica carinata | ChrC01 | 3 | CH_bca_981 | 3 | 6 | 0.000887108 |
| Brassica napus | A03 | 3 | CH_bna_393 | 4 | 16 | 0.000025025 |
| Brassica rapa | A03 | 3 | CH_bra_141 | 4 | 13 | 0.00000884328 |
| Brassica rapa | A01 | 3 | CH_bra_63 | 4 | 4 | 0.00000001243 |
| Cardamine hirsuta | Chr5 | 3 | CH_chi_265 | 3 | 4 | 0.000187462 |
| Cardamine hirsuta | Chr7 | 3 | CH_chi_35 | 7 | 11 | 0.0000000000000190002 |
| Capsella rubella | scaffold_4 | 3 | CH_cru_119 | 4 | 4 | 0.000000118762 |
| Capsella rubella | scaffold_7 | 3 | CH_cru_147 | 5 | 18 | 0.00000135638 |
| Eutrema salsugineum | scaffold_1 | 3 | CH_esa_140 | 3 | 3 | 0.0000284964 |
| Eutrema salsugineum | scaffold_10 | 3 | CH_esa_166 | 3 | 4 | 0.0001139 |
| Aethionema arabicum | LG-7 | 4 | CH_aar_10 | 8 | 10 | 3.26327e-20 |
| Arabidopsis lyrata | scaffold_5 | 4 | CH_aly_101 | 4 | 4 | 0.000000272845 |
| Arabidopsis lyrata | scaffold_4 | 4 | CH_aly_31 | 6 | 6 | 0.000000000000728229 |
| Arabidopsis lyrata | scaffold_3 | 4 | CH_aly_318 | 3 | 4 | 0.000647546 |
| Arabidopsis lyrata | scaffold_7 | 4 | CH_aly_63 | 5 | 6 | 0.00000000269788 |
| Arabidopsis thaliana | Chr4 | 4 | CH_ath_224 | 5 | 38 | 0.00000187304 |
| Brassica carinata | Contig365 | 4 | CH_bca_157 | 5 | 11 | 0.0000000116119 |
| Brassica carinata | ChrB01 | 4 | CH_bca_188 | 4 | 4 | 0.000000033719 |
| Brassica carinata | Contig593 | 4 | CH_bca_813 | 3 | 5 | 0.000443811 |
| Brassica carinata | ChrC01 | 4 | CH_bca_981 | 3 | 6 | 0.000887108 |
| Brassica napus | A03 | 4 | CH_bna_393 | 4 | 16 | 0.000025025 |
| Brassica rapa | A03 | 4 | CH_bra_141 | 4 | 13 | 0.00000884328 |
| Brassica rapa | A01 | 4 | CH_bra_63 | 4 | 4 | 0.00000001243 |
| Cardamine hirsuta | Chr5 | 4 | CH_chi_265 | 3 | 4 | 0.000187462 |
| Cardamine hirsuta | Chr7 | 4 | CH_chi_35 | 7 | 11 | 0.0000000000000190002 |
| Capsella rubella | scaffold_4 | 4 | CH_cru_119 | 4 | 4 | 0.000000118762 |
| Capsella rubella | scaffold_7 | 4 | CH_cru_147 | 5 | 18 | 0.00000135638 |
| Eutrema salsugineum | scaffold_1 | 4 | CH_esa_140 | 3 | 3 | 0.0000284964 |
| Eutrema salsugineum | scaffold_10 | 4 | CH_esa_166 | 3 | 4 | 0.0001139 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |