Functional clusters

Information

  • Type Gene Ontology
  • Description positive regulation of cellular process

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Sequoiadendron giganteum chr1 3 CH_sgi_538 12 31 0.0000000276942
Trochodendron aralioides group0 3 CH_tar_233 14 52 0.0000237428
Sequoiadendron giganteum chr1 4 CH_sgi_538 12 31 0.0000000276942
Trochodendron aralioides group0 4 CH_tar_233 14 52 0.0000237428

Available child term results

Ontology identifier Description Number of clusters
GO:0000288 nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay 2
GO:0000289 nuclear-transcribed mRNA poly(A) tail shortening 8
GO:0000290 deadenylation-dependent decapping of nuclear-transcribed mRNA 10
GO:0006990 positive regulation of transcription from RNA polymerase II promoter involved in unfolded protein response 6
GO:0008284 positive regulation of cell population proliferation 6
GO:0009789 positive regulation of abscisic acid-activated signaling pathway 2
GO:0009939 positive regulation of gibberellic acid mediated signaling pathway 2
GO:0010063 positive regulation of trichoblast fate specification 2
GO:0010116 positive regulation of abscisic acid biosynthetic process 6
GO:0010365 positive regulation of ethylene biosynthetic process 16
GO:0010372 positive regulation of gibberellin biosynthetic process 2
GO:0010455 positive regulation of cell fate commitment 2
GO:0010513 positive regulation of phosphatidylinositol biosynthetic process 2
GO:0010601 positive regulation of auxin biosynthetic process 2
GO:0010606 positive regulation of cytoplasmic mRNA processing body assembly 16
GO:0010726 positive regulation of hydrogen peroxide metabolic process 22
GO:0010729 positive regulation of hydrogen peroxide biosynthetic process 6
GO:0010845 positive regulation of reciprocal meiotic recombination 2
GO:0010922 positive regulation of phosphatase activity 12
GO:0010942 positive regulation of cell death 6
GO:0010971 positive regulation of G2/M transition of mitotic cell cycle 2
GO:0012502 induction of programmed cell death 2
GO:0031116 positive regulation of microtubule polymerization 4
GO:0031117 positive regulation of microtubule depolymerization 10
GO:0031325 positive regulation of cellular metabolic process 2
GO:0031328 positive regulation of cellular biosynthetic process 4
GO:0031937 positive regulation of chromatin silencing 14
GO:0032008 positive regulation of TOR signaling 4
GO:0032147 activation of protein kinase activity 10
GO:0032212 positive regulation of telomere maintenance via telomerase 2
GO:0032786 positive regulation of DNA-templated transcription, elongation 8
GO:0032877 positive regulation of DNA endoreduplication 4
GO:0032968 positive regulation of transcription elongation from RNA polymerase II promoter 32
GO:0033184 positive regulation of histone ubiquitination 4
GO:0033674 positive regulation of kinase activity 6
GO:0034052 positive regulation of plant-type hypersensitive response 2
GO:0034263 positive regulation of autophagy in response to ER overload 2
GO:0034314 Arp2/3 complex-mediated actin nucleation 12
GO:0043068 positive regulation of programmed cell death 4
GO:0045010 actin nucleation 2
GO:0045723 positive regulation of fatty acid biosynthetic process 6
GO:0045727 positive regulation of translation 18
GO:0045739 positive regulation of DNA repair 4
GO:0045770 positive regulation of asymmetric cell division 2
GO:0045787 positive regulation of cell cycle 2
GO:0045876 positive regulation of sister chromatid cohesion 10
GO:0045893 positive regulation of transcription, DNA-templated 4
GO:0045901 positive regulation of translational elongation 18
GO:0045905 positive regulation of translational termination 2
GO:0045931 positive regulation of mitotic cell cycle 2
GO:0045943 positive regulation of transcription by RNA polymerase I 2
GO:0045944 positive regulation of transcription by RNA polymerase II 34
GO:0048026 positive regulation of mRNA splicing, via spliceosome 4
GO:0051127 positive regulation of actin nucleation 2
GO:0051254 positive regulation of RNA metabolic process 4
GO:0051512 positive regulation of unidimensional cell growth 2
GO:0051571 positive regulation of histone H3-K4 methylation 8
GO:0051781 positive regulation of cell division 2
GO:0051841 positive regulation by host of cytolysis of symbiont cells 32
GO:0051973 positive regulation of telomerase activity 14
GO:0060261 positive regulation of transcription initiation from RNA polymerase II promoter 16
GO:0061158 3'-UTR-mediated mRNA destabilization 4
GO:0070455 positive regulation of heme biosynthetic process 4
GO:0080038 positive regulation of cytokinin-activated signaling pathway 2
GO:0080040 positive regulation of cellular response to phosphate starvation 18
GO:0080151 positive regulation of salicylic acid mediated signaling pathway 2
GO:0090063 positive regulation of microtubule nucleation 4
GO:0090070 positive regulation of ribosome biogenesis 6
GO:0090228 positive regulation of red or far-red light signaling pathway 14
GO:0090309 positive regulation of DNA methylation-dependent heterochromatin assembly 2
GO:0090316 positive regulation of intracellular protein transport 2
GO:1900036 positive regulation of cellular response to heat 2
GO:1900039 positive regulation of cellular response to hypoxia 4
GO:1900064 positive regulation of peroxisome organization 2
GO:1900103 positive regulation of endoplasmic reticulum unfolded protein response 2
GO:1900151 regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay 2
GO:1900370 positive regulation of RNA interference 22
GO:1900409 positive regulation of cellular response to oxidative stress 12
GO:1900459 positive regulation of brassinosteroid mediated signaling pathway 38
GO:1900486 positive regulation of isopentenyl diphosphate biosynthetic process, mevalonate pathway 8
GO:1900706 positive regulation of siderophore biosynthetic process 96
GO:1901430 positive regulation of syringal lignin biosynthetic process 14
GO:1901485 positive regulation of transcription factor catabolic process 6
GO:1901529 positive regulation of anion channel activity 8
GO:1901537 positive regulation of DNA demethylation 18
GO:1901800 positive regulation of proteasomal protein catabolic process 2
GO:1901969 positive regulation of polynucleotide 3'-phosphatase activity 2
GO:1902458 positive regulation of stomatal opening 2
GO:1902466 positive regulation of histone H3-K27 trimethylation 2
GO:1902553 positive regulation of catalase activity 2
GO:1902892 positive regulation of root hair elongation 2
GO:1902916 positive regulation of protein polyubiquitination 8
GO:1903099 positive regulation of CENP-A containing nucleosome assembly 6
GO:1903343 positive regulation of meiotic DNA double-strand break formation 2
GO:1903428 positive regulation of reactive oxygen species biosynthetic process 2
GO:1903527 positive regulation of membrane tubulation 2
GO:1904143 positive regulation of carotenoid biosynthetic process 4
GO:1904263 positive regulation of TORC1 signaling 4
GO:1904294 positive regulation of ERAD pathway 12
GO:1904668 positive regulation of ubiquitin protein ligase activity 28
GO:1904964 positive regulation of phytol biosynthetic process 12
GO:1905157 positive regulation of photosynthesis 2
GO:1905168 positive regulation of double-strand break repair via homologous recombination 4
GO:2000234 positive regulation of rRNA processing 8
GO:2000541 positive regulation of protein geranylgeranylation 2
GO:2000617 positive regulation of histone H3-K9 acetylation 2
GO:2000636 positive regulation of primary miRNA processing 6
GO:2000685 positive regulation of cellular response to X-ray 2
GO:2000711 positive regulation of maintenance of meiotic sister chromatid cohesion, centromeric 2
GO:2000786 positive regulation of autophagosome assembly 2
GO:2001011 positive regulation of plant-type cell wall cellulose biosynthetic process 4
GO:2001280 positive regulation of unsaturated fatty acid biosynthetic process 2

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001