Functional clusters

Information

  • Type Gene Ontology
  • Description intracellular anatomical structure

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Arabidopsis thaliana Chr4 3 CH_ath_140 28 31 0.0000000270622
Arabidopsis thaliana Chr3 3 CH_ath_339 22 24 0.0000251827
Erigeron canadensis Conyza_canadensis_scaffold:8 3 CH_eca_338 29 56 0.000187886
Fragaria vesca Fvb5 3 CH_fve_235 28 43 0.0000413797
Lactuca sativa Lsat_1_v8_lg_9 3 CH_lsa_496 30 48 0.000799331
Magnolia biondii Chr07 3 CH_mbi_630 19 28 0.000626316
Manihot esculenta Chromosome03 3 CH_mes_222 29 35 0.00000533241
Nelumbo nucifera chr3 3 CH_nnu_321 22 33 0.000771433
Salvia bowleyana GWHASIU00000006 3 CH_sbo_221 30 49 0.000000901959
Solanum pennellii Spenn-ch07 3 CH_spe_260 18 23 0.0000280338
Solanum pennellii Spenn-ch10 3 CH_spe_293 28 49 0.0000577722
Solanum tuberosum ST4.03ch07 3 CH_stu_441 21 24 0.000147902
Solanum tuberosum ST4.03ch05 3 CH_stu_485 26 33 0.000170112
Arabidopsis thaliana Chr4 4 CH_ath_140 28 31 0.0000000270622
Arabidopsis thaliana Chr3 4 CH_ath_339 22 24 0.0000251827
Erigeron canadensis Conyza_canadensis_scaffold:8 4 CH_eca_338 29 56 0.000187886
Fragaria vesca Fvb5 4 CH_fve_235 28 43 0.0000413797
Lactuca sativa Lsat_1_v8_lg_9 4 CH_lsa_496 30 48 0.000799331
Magnolia biondii Chr07 4 CH_mbi_630 19 28 0.000626316
Manihot esculenta Chromosome03 4 CH_mes_222 29 35 0.00000533241
Nelumbo nucifera chr3 4 CH_nnu_321 22 33 0.000771433
Salvia bowleyana GWHASIU00000006 4 CH_sbo_221 30 49 0.000000901959
Solanum pennellii Spenn-ch07 4 CH_spe_260 18 23 0.0000280338
Solanum pennellii Spenn-ch10 4 CH_spe_293 28 49 0.0000577722
Solanum tuberosum ST4.03ch07 4 CH_stu_441 21 24 0.000147902
Solanum tuberosum ST4.03ch05 4 CH_stu_485 26 33 0.000170112

Available child term results

Ontology identifier Description Number of clusters
GO:0000112 nucleotide-excision repair factor 3 complex 2
GO:0000118 histone deacetylase complex 4
GO:0000123 histone acetyltransferase complex 2
GO:0000124 SAGA complex 10
GO:0000139 Golgi membrane 10
GO:0000145 exocyst 110
GO:0000176 nuclear exosome (RNase complex) 2
GO:0000178 exosome (RNase complex) 10
GO:0000221 vacuolar proton-transporting V-type ATPase, V1 domain 34
GO:0000275 mitochondrial proton-transporting ATP synthase complex, catalytic sector F(1) 20
GO:0000276 mitochondrial proton-transporting ATP synthase complex, coupling factor F(o) 22
GO:0000306 extrinsic component of vacuolar membrane 4
GO:0000311 plastid large ribosomal subunit 4
GO:0000312 plastid small ribosomal subunit 10
GO:0000313 organellar ribosome 14
GO:0000326 protein storage vacuole 22
GO:0000327 lytic vacuole within protein storage vacuole 12
GO:0000347 THO complex 8
GO:0000407 phagophore assembly site 2
GO:0000418 RNA polymerase IV complex 8
GO:0000419 RNA polymerase V complex 6
GO:0000421 autophagosome membrane 4
GO:0000427 plastid-encoded plastid RNA polymerase complex 2
GO:0000439 transcription factor TFIIH core complex 12
GO:0000445 THO complex part of transcription export complex 2
GO:0000506 glycosylphosphatidylinositol-N-acetylglucosaminyltransferase (GPI-GnT) complex 10
GO:0000775 chromosome, centromeric region 4
GO:0000776 kinetochore 2
GO:0000781 chromosome, telomeric region 4
GO:0000785 chromatin 4
GO:0000786 nucleosome 162
GO:0000792 heterochromatin 8
GO:0000795 synaptonemal complex 4
GO:0000796 condensin complex 36
GO:0000802 transverse filament 20
GO:0000808 origin recognition complex 8
GO:0000811 GINS complex 8
GO:0000812 Swr1 complex 4
GO:0000813 ESCRT I complex 2
GO:0000814 ESCRT II complex 20
GO:0000818 nuclear MIS12/MIND complex 2
GO:0000922 spindle pole 26
GO:0000923 equatorial microtubule organizing center 2
GO:0000931 gamma-tubulin large complex 4
GO:0000938 GARP complex 30
GO:0000940 outer kinetochore 4
GO:0001534 radial spoke 4
GO:0001673 male germ cell nucleus 2
GO:0005634 nucleus 20
GO:0005635 nuclear envelope 4
GO:0005637 nuclear inner membrane 4
GO:0005639 integral component of nuclear inner membrane 2
GO:0005640 nuclear outer membrane 2
GO:0005641 nuclear envelope lumen 2
GO:0005643 nuclear pore 32
GO:0005652 nuclear lamina 8
GO:0005654 nucleoplasm 2
GO:0005655 nucleolar ribonuclease P complex 30
GO:0005656 nuclear pre-replicative complex 2
GO:0005657 replication fork 2
GO:0005662 DNA replication factor A complex 4
GO:0005664 nuclear origin of replication recognition complex 16
GO:0005665 RNA polymerase II, core complex 2
GO:0005666 RNA polymerase III complex 14
GO:0005669 transcription factor TFIID complex 28
GO:0005672 transcription factor TFIIA complex 8
GO:0005673 transcription factor TFIIE complex 8
GO:0005674 transcription factor TFIIF complex 10
GO:0005677 chromatin silencing complex 8
GO:0005680 anaphase-promoting complex 22
GO:0005681 spliceosomal complex 42
GO:0005682 U5 snRNP 4
GO:0005685 U1 snRNP 4
GO:0005688 U6 snRNP 2
GO:0005689 U12-type spliceosomal complex 14
GO:0005694 chromosome 4
GO:0005712 chiasma 4
GO:0005721 pericentric heterochromatin 16
GO:0005730 nucleolus 14
GO:0005736 RNA polymerase I complex 2
GO:0005737 cytoplasm 52
GO:0005739 mitochondrion 40
GO:0005740 mitochondrial envelope 2
GO:0005741 mitochondrial outer membrane 2
GO:0005742 mitochondrial outer membrane translocase complex 8
GO:0005743 mitochondrial inner membrane 16
GO:0005744 TIM23 mitochondrial import inner membrane translocase complex 12
GO:0005747 mitochondrial respiratory chain complex I 6
GO:0005749 mitochondrial respiratory chain complex II, succinate dehydrogenase complex (ubiquinone) 2
GO:0005750 mitochondrial respiratory chain complex III 2
GO:0005753 mitochondrial proton-transporting ATP synthase complex 2
GO:0005754 mitochondrial proton-transporting ATP synthase, catalytic core 6
GO:0005758 mitochondrial intermembrane space 2
GO:0005759 mitochondrial matrix 30
GO:0005761 mitochondrial ribosome 2
GO:0005762 mitochondrial large ribosomal subunit 8
GO:0005763 mitochondrial small ribosomal subunit 14
GO:0005764 lysosome 4
GO:0005768 endosome 2
GO:0005769 early endosome 4
GO:0005773 vacuole 16
GO:0005774 vacuolar membrane 14
GO:0005775 vacuolar lumen 8
GO:0005777 peroxisome 80
GO:0005779 integral component of peroxisomal membrane 2
GO:0005782 peroxisomal matrix 4
GO:0005783 endoplasmic reticulum 20
GO:0005784 Sec61 translocon complex 8
GO:0005785 signal recognition particle receptor complex 12
GO:0005787 signal peptidase complex 18
GO:0005789 endoplasmic reticulum membrane 14
GO:0005794 Golgi apparatus 6
GO:0005795 Golgi stack 2
GO:0005796 Golgi lumen 2
GO:0005797 Golgi medial cisterna 2
GO:0005801 cis-Golgi network 10
GO:0005802 trans-Golgi network 12
GO:0005811 lipid droplet 2
GO:0005813 centrosome 2
GO:0005815 microtubule organizing center 2
GO:0005819 spindle 2
GO:0005828 kinetochore microtubule 2
GO:0005829 cytosol 42
GO:0005838 proteasome regulatory particle 10
GO:0005839 proteasome core complex 2
GO:0005840 ribosome 40
GO:0005847 mRNA cleavage and polyadenylation specificity factor complex 24
GO:0005848 mRNA cleavage stimulating factor complex 16
GO:0005849 mRNA cleavage factor complex 8
GO:0005852 eukaryotic translation initiation factor 3 complex 14
GO:0005854 nascent polypeptide-associated complex 34
GO:0005874 microtubule 6
GO:0005876 spindle microtubule 2
GO:0005880 nuclear microtubule 6
GO:0005885 Arp2/3 protein complex 2
GO:0005960 glycine cleavage complex 10
GO:0008250 oligosaccharyltransferase complex 6
GO:0008278 cohesin complex 20
GO:0008290 F-actin capping protein complex 16
GO:0008352 katanin complex 2
GO:0008622 epsilon DNA polymerase complex 38
GO:0009317 acetyl-CoA carboxylase complex 8
GO:0009329 acetate CoA-transferase complex 6
GO:0009501 amyloplast 8
GO:0009507 chloroplast 38
GO:0009508 plastid chromosome 2
GO:0009509 chromoplast 4
GO:0009511 plasmodesmatal endoplasmic reticulum 6
GO:0009512 cytochrome b6f complex 6
GO:0009515 granal stacked thylakoid 2
GO:0009517 PSII associated light-harvesting complex II 2
GO:0009521 photosystem 8
GO:0009522 photosystem I 8
GO:0009523 photosystem II 14
GO:0009524 phragmoplast 8
GO:0009526 plastid envelope 4
GO:0009532 plastid stroma 2
GO:0009533 chloroplast stromal thylakoid 2
GO:0009534 chloroplast thylakoid 6
GO:0009535 chloroplast thylakoid membrane 46
GO:0009536 plastid 62
GO:0009538 photosystem I reaction center 4
GO:0009539 photosystem II reaction center 16
GO:0009543 chloroplast thylakoid lumen 2
GO:0009547 plastid ribosome 76
GO:0009569 chloroplast starch grain 2
GO:0009570 chloroplast stroma 8
GO:0009571 proplastid stroma 4
GO:0009574 preprophase band 2
GO:0009575 chromoplast stroma 4
GO:0009578 etioplast stroma 12
GO:0009579 thylakoid 34
GO:0009654 photosystem II oxygen evolving complex 8
GO:0009706 chloroplast inner membrane 10
GO:0009707 chloroplast outer membrane 4
GO:0009782 photosystem I antenna complex 2
GO:0009783 photosystem II antenna complex 6
GO:0009923 fatty acid elongase complex 6
GO:0009941 chloroplast envelope 10
GO:0010006 Toc complex 2
GO:0010008 endosome membrane 10
GO:0010168 ER body 18
GO:0010240 plastid pyruvate dehydrogenase complex 10
GO:0010282 senescence-associated vacuole 42
GO:0010287 plastoglobule 12
GO:0010319 stromule 2
GO:0010368 chloroplast isoamylase complex 2
GO:0010369 chromocenter 24
GO:0010370 perinucleolar chromocenter 4
GO:0010494 cytoplasmic stress granule 4
GO:0012511 monolayer-surrounded lipid storage body 48
GO:0015030 Cajal body 2
GO:0015629 actin cytoskeleton 2
GO:0015934 large ribosomal subunit 14
GO:0015935 small ribosomal subunit 18
GO:0016281 eukaryotic translation initiation factor 4F complex 2
GO:0016363 nuclear matrix 6
GO:0016459 myosin complex 22
GO:0016471 vacuolar proton-transporting V-type ATPase complex 4
GO:0016514 SWI/SNF complex 8
GO:0016591 RNA polymerase II, holoenzyme 2
GO:0016592 mediator complex 24
GO:0016593 Cdc73/Paf1 complex 6
GO:0016602 CCAAT-binding factor complex 42
GO:0016604 nuclear body 6
GO:0016607 nuclear speck 8
GO:0017059 serine C-palmitoyltransferase complex 2
GO:0017119 Golgi transport complex 14
GO:0018444 translation release factor complex 12
GO:0019773 proteasome core complex, alpha-subunit complex 12
GO:0022625 cytosolic large ribosomal subunit 6
GO:0022626 cytosolic ribosome 4
GO:0022627 cytosolic small ribosomal subunit 10
GO:0030093 chloroplast photosystem I 2
GO:0030095 chloroplast photosystem II 4
GO:0030117 membrane coat 18
GO:0030121 AP-1 adaptor complex 4
GO:0030122 AP-2 adaptor complex 6
GO:0030123 AP-3 adaptor complex 16
GO:0030126 COPI vesicle coat 8
GO:0030127 COPII vesicle coat 16
GO:0030132 clathrin coat of coated pit 8
GO:0030134 COPII-coated ER to Golgi transport vesicle 10
GO:0030176 integral component of endoplasmic reticulum membrane 6
GO:0030286 dynein complex 2
GO:0030875 rDNA protrusion 2
GO:0030896 checkpoint clamp complex 20
GO:0030915 Smc5-Smc6 complex 28
GO:0031011 Ino80 complex 18
GO:0031080 nuclear pore outer ring 2
GO:0031083 BLOC-1 complex 10
GO:0031201 SNARE complex 6
GO:0031213 RSF complex 28
GO:0031234 extrinsic component of cytoplasmic side of plasma membrane 4
GO:0031262 Ndc80 complex 14
GO:0031303 integral component of endosome membrane 4
GO:0031304 intrinsic component of mitochondrial inner membrane 2
GO:0031307 integral component of mitochondrial outer membrane 6
GO:0031313 extrinsic component of endosome membrane 6
GO:0031314 extrinsic component of mitochondrial inner membrane 52
GO:0031357 integral component of chloroplast inner membrane 12
GO:0031359 integral component of chloroplast outer membrane 2
GO:0031380 nuclear RNA-directed RNA polymerase complex 2
GO:0031390 Ctf18 RFC-like complex 18
GO:0031415 NatA complex 8
GO:0031417 NatC complex 6
GO:0031422 RecQ family helicase-topoisomerase III complex 14
GO:0031469 polyhedral organelle 2
GO:0031515 tRNA (m1A) methyltransferase complex 4
GO:0031519 PcG protein complex 8
GO:0031597 cytosolic proteasome complex 10
GO:0031897 Tic complex 10
GO:0031966 mitochondrial membrane 4
GO:0031967 organelle envelope 4
GO:0031972 chloroplast intermembrane space 4
GO:0031976 plastid thylakoid 2
GO:0031977 thylakoid lumen 4
GO:0031984 organelle subcompartment 4
GO:0032039 integrator complex 44
GO:0032300 mismatch repair complex 26
GO:0032541 cortical endoplasmic reticulum 2
GO:0032578 aleurone grain membrane 2
GO:0032585 multivesicular body membrane 2
GO:0032586 protein storage vacuole membrane 2
GO:0032588 trans-Golgi network membrane 2
GO:0032592 integral component of mitochondrial membrane 4
GO:0032777 Piccolo NuA4 histone acetyltransferase complex 24
GO:0032783 super elongation complex 6
GO:0033063 Rad51B-Rad51C-Rad51D-XRCC2 complex 10
GO:0033095 aleurone grain 2
GO:0033263 CORVET complex 4
GO:0033597 mitotic checkpoint complex 8
GO:0034066 Ric1-Rgp1 guanyl-nucleotide exchange factor complex 18
GO:0034245 mitochondrial DNA-directed RNA polymerase complex 2
GO:0034357 photosynthetic membrane 26
GO:0034457 Mpp10 complex 24
GO:0034663 endoplasmic reticulum chaperone complex 2
GO:0034693 U11/U12 snRNP 6
GO:0034998 oligosaccharyltransferase I complex 2
GO:0035060 brahma complex 4
GO:0035061 interchromatin granule 6
GO:0035098 ESC/E(Z) complex 2
GO:0035101 FACT complex 74
GO:0035102 PRC1 complex 14
GO:0035145 exon-exon junction complex 8
GO:0035267 NuA4 histone acetyltransferase complex 14
GO:0035451 extrinsic component of stromal side of plastid thylakoid membrane 2
GO:0035452 extrinsic component of plastid membrane 4
GO:0035658 Mon1-Ccz1 complex 12
GO:0035770 ribonucleoprotein granule 2
GO:0035861 site of double-strand break 4
GO:0036396 RNA N6-methyladenosine methyltransferase complex 2
GO:0042406 extrinsic component of endoplasmic reticulum membrane 2
GO:0042644 chloroplast nucleoid 4
GO:0042651 thylakoid membrane 2
GO:0042720 mitochondrial inner membrane peptidase complex 8
GO:0042721 TIM22 mitochondrial import inner membrane insertion complex 20
GO:0042729 DASH complex 2
GO:0042735 protein body 44
GO:0042765 GPI-anchor transamidase complex 4
GO:0042788 polysomal ribosome 4
GO:0042807 central vacuole 8
GO:0043078 polar nucleus 18
GO:0043229 intracellular organelle 44
GO:0043231 intracellular membrane-bounded organelle 32
GO:0043232 intracellular non-membrane-bounded organelle 16
GO:0043240 Fanconi anaemia nuclear complex 8
GO:0043564 Ku70:Ku80 complex 16
GO:0043601 nuclear replisome 2
GO:0043625 delta DNA polymerase complex 10
GO:0044391 ribosomal subunit 10
GO:0044611 nuclear pore inner ring 4
GO:0045025 mitochondrial degradosome 2
GO:0045252 oxoglutarate dehydrogenase complex 2
GO:0045261 proton-transporting ATP synthase complex, catalytic core F(1) 34
GO:0045263 proton-transporting ATP synthase complex, coupling factor F(o) 12
GO:0045273 respiratory chain complex II 2
GO:0045298 tubulin complex 4
GO:0045334 clathrin-coated endocytic vesicle 2
GO:0046540 U4/U6 x U5 tri-snRNP complex 14
GO:0046695 SLIK (SAGA-like) complex 8
GO:0048188 Set1C/COMPASS complex 6
GO:0048353 primary endosperm nucleus 4
GO:0048471 perinuclear region of cytoplasm 30
GO:0048500 signal recognition particle 10
GO:0048555 generative cell nucleus 6
GO:0048556 microsporocyte nucleus 2
GO:0055028 cortical microtubule 2
GO:0055029 nuclear DNA-directed RNA polymerase complex 2
GO:0055087 Ski complex 6
GO:0061908 phagophore 12
GO:0061927 TOC-TIC supercomplex I 2
GO:0070382 exocytic vesicle 2
GO:0070449 elongin complex 16
GO:0070461 SAGA-type complex 2
GO:0070531 BRCA1-A complex 16
GO:0070652 HAUS complex 18
GO:0070772 PAS complex 16
GO:0070939 Dsl1/NZR complex 2
GO:0071006 U2-type catalytic step 1 spliceosome 2
GO:0071013 catalytic step 2 spliceosome 10
GO:0071203 WASH complex 6
GO:0071458 integral component of cytoplasmic side of endoplasmic reticulum membrane 4
GO:0071540 eukaryotic translation initiation factor 3 complex, eIF3e 2
GO:0071818 BAT3 complex 2
GO:0071821 FANCM-MHF complex 6
GO:0072546 EMC complex 20
GO:0072686 mitotic spindle 12
GO:0080085 signal recognition particle, chloroplast targeting 4
GO:0089701 U2AF complex 36
GO:0090730 Las1 complex 16
GO:0097361 CIA complex 4
GO:0097708 intracellular vesicle 2
GO:0098791 Golgi apparatus subcompartment 2
GO:0098798 mitochondrial protein-containing complex 64
GO:0098800 inner mitochondrial membrane protein complex 4
GO:0098827 endoplasmic reticulum subcompartment 2
GO:0099513 polymeric cytoskeletal fiber 2
GO:0099738 cell cortex region 2
GO:0140513 nuclear protein-containing complex 6
GO:1990071 TRAPPII protein complex 16
GO:1990316 Atg1/ULK1 kinase complex 10
GO:1990457 pexophagosome 8
GO:1990578 perinuclear endoplasmic reticulum membrane 46
GO:1990718 axonemal central pair projection 6
GO:1990745 EARP complex 26
GO:1990752 microtubule end 2
GO:1990879 CST complex 2

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001