Functional clusters

Information

  • Type Gene Ontology
  • Description cytosol

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Aethionema arabicum LG-8 3 CH_aar_133 11 16 0.0000333314
Arabidopsis thaliana Chr3 3 CH_ath_119 24 71 0.0000000094557
Arabidopsis thaliana Chr3 3 CH_ath_192 23 78 0.000000548316
Arabidopsis thaliana Chr3 3 CH_ath_196 18 47 0.000000704607
Arabidopsis thaliana Chr2 3 CH_ath_245 17 45 0.00000342214
Arabidopsis thaliana Chr2 3 CH_ath_309 18 55 0.0000147985
Arabidopsis thaliana Chr3 3 CH_ath_369 20 72 0.0000407006
Brassica napus C04 3 CH_bna_573 12 32 0.000391221
Brassica rapa A06 3 CH_bra_301 9 15 0.000816853
Corylus avellana 8 3 CH_cav_348 11 21 0.000245769
Corylus avellana 4 3 CH_cav_386 10 18 0.000560132
Cucumis sativus L. chr1 3 CH_csa_197 16 41 0.0001088
Medicago truncatula chr1 3 CH_mtr_648 10 22 0.000320937
Pisum sativum chr3LG5 3 CH_psa_386 13 41 0.000792939
Rosa chinensis RcHm_v2.0_Chr2 3 CH_rch_608 6 6 0.000130102
Rhododendron simsii chr11 3 CH_rsi_258 9 10 0.00000189222
Rhododendron simsii chr12 3 CH_rsi_518 11 24 0.00080497
Salvia bowleyana GWHASIU00000006 3 CH_sbo_132 23 78 0.00000000234425
Sequoiadendron giganteum chr1 3 CH_sgi_1167 16 54 0.000173969
Sequoiadendron giganteum chr9 3 CH_sgi_149 27 51 1.3843e-17
Vanilla planifolia CM028155.1 3 CH_vpl_324 8 10 0.000500288
Aethionema arabicum LG-8 4 CH_aar_133 11 16 0.0000333314
Arabidopsis thaliana Chr3 4 CH_ath_119 24 71 0.0000000094557
Arabidopsis thaliana Chr3 4 CH_ath_192 23 78 0.000000548316
Arabidopsis thaliana Chr3 4 CH_ath_196 18 47 0.000000704607
Arabidopsis thaliana Chr2 4 CH_ath_245 17 45 0.00000342214
Arabidopsis thaliana Chr2 4 CH_ath_309 18 55 0.0000147985
Arabidopsis thaliana Chr3 4 CH_ath_369 20 72 0.0000407006
Brassica napus C04 4 CH_bna_573 12 32 0.000391221
Brassica rapa A06 4 CH_bra_301 9 15 0.000816853
Corylus avellana 8 4 CH_cav_348 11 21 0.000245769
Corylus avellana 4 4 CH_cav_386 10 18 0.000560132
Cucumis sativus L. chr1 4 CH_csa_197 16 41 0.0001088
Medicago truncatula chr1 4 CH_mtr_648 10 22 0.000320937
Pisum sativum chr3LG5 4 CH_psa_386 13 41 0.000792939
Rosa chinensis RcHm_v2.0_Chr2 4 CH_rch_608 6 6 0.000130102
Rhododendron simsii chr11 4 CH_rsi_258 9 10 0.00000189222
Rhododendron simsii chr12 4 CH_rsi_518 11 24 0.00080497
Salvia bowleyana GWHASIU00000006 4 CH_sbo_132 23 78 0.00000000234425
Sequoiadendron giganteum chr1 4 CH_sgi_1167 16 54 0.000173969
Sequoiadendron giganteum chr9 4 CH_sgi_149 27 51 1.3843e-17
Vanilla planifolia CM028155.1 4 CH_vpl_324 8 10 0.000500288

Available child term results

Ontology identifier Description Number of clusters
GO:0022625 cytosolic large ribosomal subunit 6
GO:0022626 cytosolic ribosome 4
GO:0022627 cytosolic small ribosomal subunit 10
GO:0031083 BLOC-1 complex 10
GO:0031597 cytosolic proteasome complex 10
GO:0071818 BAT3 complex 2
GO:0090730 Las1 complex 16
GO:0097361 CIA complex 4

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001