Functional clusters
Information
- Type Gene Ontology
- Description cytosol
Cluster overview
Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
---|---|---|---|---|---|---|
Aethionema arabicum | LG-8 | 3 | CH_aar_133 | 11 | 16 | 0.0000333314 |
Arabidopsis thaliana | Chr3 | 3 | CH_ath_119 | 24 | 71 | 0.0000000094557 |
Arabidopsis thaliana | Chr3 | 3 | CH_ath_192 | 23 | 78 | 0.000000548316 |
Arabidopsis thaliana | Chr3 | 3 | CH_ath_196 | 18 | 47 | 0.000000704607 |
Arabidopsis thaliana | Chr2 | 3 | CH_ath_245 | 17 | 45 | 0.00000342214 |
Arabidopsis thaliana | Chr2 | 3 | CH_ath_309 | 18 | 55 | 0.0000147985 |
Arabidopsis thaliana | Chr3 | 3 | CH_ath_369 | 20 | 72 | 0.0000407006 |
Brassica napus | C04 | 3 | CH_bna_573 | 12 | 32 | 0.000391221 |
Brassica rapa | A06 | 3 | CH_bra_301 | 9 | 15 | 0.000816853 |
Corylus avellana | 8 | 3 | CH_cav_348 | 11 | 21 | 0.000245769 |
Corylus avellana | 4 | 3 | CH_cav_386 | 10 | 18 | 0.000560132 |
Cucumis sativus L. | chr1 | 3 | CH_csa_197 | 16 | 41 | 0.0001088 |
Medicago truncatula | chr1 | 3 | CH_mtr_648 | 10 | 22 | 0.000320937 |
Pisum sativum | chr3LG5 | 3 | CH_psa_386 | 13 | 41 | 0.000792939 |
Rosa chinensis | RcHm_v2.0_Chr2 | 3 | CH_rch_608 | 6 | 6 | 0.000130102 |
Rhododendron simsii | chr11 | 3 | CH_rsi_258 | 9 | 10 | 0.00000189222 |
Rhododendron simsii | chr12 | 3 | CH_rsi_518 | 11 | 24 | 0.00080497 |
Salvia bowleyana | GWHASIU00000006 | 3 | CH_sbo_132 | 23 | 78 | 0.00000000234425 |
Sequoiadendron giganteum | chr1 | 3 | CH_sgi_1167 | 16 | 54 | 0.000173969 |
Sequoiadendron giganteum | chr9 | 3 | CH_sgi_149 | 27 | 51 | 1.3843e-17 |
Vanilla planifolia | CM028155.1 | 3 | CH_vpl_324 | 8 | 10 | 0.000500288 |
Aethionema arabicum | LG-8 | 4 | CH_aar_133 | 11 | 16 | 0.0000333314 |
Arabidopsis thaliana | Chr3 | 4 | CH_ath_119 | 24 | 71 | 0.0000000094557 |
Arabidopsis thaliana | Chr3 | 4 | CH_ath_192 | 23 | 78 | 0.000000548316 |
Arabidopsis thaliana | Chr3 | 4 | CH_ath_196 | 18 | 47 | 0.000000704607 |
Arabidopsis thaliana | Chr2 | 4 | CH_ath_245 | 17 | 45 | 0.00000342214 |
Arabidopsis thaliana | Chr2 | 4 | CH_ath_309 | 18 | 55 | 0.0000147985 |
Arabidopsis thaliana | Chr3 | 4 | CH_ath_369 | 20 | 72 | 0.0000407006 |
Brassica napus | C04 | 4 | CH_bna_573 | 12 | 32 | 0.000391221 |
Brassica rapa | A06 | 4 | CH_bra_301 | 9 | 15 | 0.000816853 |
Corylus avellana | 8 | 4 | CH_cav_348 | 11 | 21 | 0.000245769 |
Corylus avellana | 4 | 4 | CH_cav_386 | 10 | 18 | 0.000560132 |
Cucumis sativus L. | chr1 | 4 | CH_csa_197 | 16 | 41 | 0.0001088 |
Medicago truncatula | chr1 | 4 | CH_mtr_648 | 10 | 22 | 0.000320937 |
Pisum sativum | chr3LG5 | 4 | CH_psa_386 | 13 | 41 | 0.000792939 |
Rosa chinensis | RcHm_v2.0_Chr2 | 4 | CH_rch_608 | 6 | 6 | 0.000130102 |
Rhododendron simsii | chr11 | 4 | CH_rsi_258 | 9 | 10 | 0.00000189222 |
Rhododendron simsii | chr12 | 4 | CH_rsi_518 | 11 | 24 | 0.00080497 |
Salvia bowleyana | GWHASIU00000006 | 4 | CH_sbo_132 | 23 | 78 | 0.00000000234425 |
Sequoiadendron giganteum | chr1 | 4 | CH_sgi_1167 | 16 | 54 | 0.000173969 |
Sequoiadendron giganteum | chr9 | 4 | CH_sgi_149 | 27 | 51 | 1.3843e-17 |
Vanilla planifolia | CM028155.1 | 4 | CH_vpl_324 | 8 | 10 | 0.000500288 |
Available child term results
Ontology identifier | Description | Number of clusters |
---|---|---|
GO:0022625 | cytosolic large ribosomal subunit | 6 |
GO:0022626 | cytosolic ribosome | 4 |
GO:0022627 | cytosolic small ribosomal subunit | 10 |
GO:0031083 | BLOC-1 complex | 10 |
GO:0031597 | cytosolic proteasome complex | 10 |
GO:0071818 | BAT3 complex | 2 |
GO:0090730 | Las1 complex | 16 |
GO:0097361 | CIA complex | 4 |
Functional Clusters Experiments
Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
---|---|---|---|---|---|---|---|
1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |