Functional clusters

Information

  • Type Gene Ontology
  • Description protein body

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.16 3 CH_arhy_105 6 10 0.000000000000033606
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.06 3 CH_arhy_153 5 7 0.0000000000102097
Amborella trichopoda AmTr_v1.0_scaffold00067 3 CH_atr_150 3 6 0.00000662348
Cannabis sativa NC_044373.1 3 CH_cansat_61 4 4 0.0000000000594632
Cicer arietinum L. Ca_LG3_v3 3 CH_car_48 3 3 0.000000763278
Daucus carota DCARv2_Chr5 3 CH_dca_178 3 5 0.00000512351
Erigeron canadensis Conyza_canadensis_scaffold:9 3 CH_eca_146 3 4 0.00000042281
Fragaria x ananassa Fvb2-4 3 CH_fan_132 4 8 0.0000000695963
Fragaria x ananassa Fvb2-3 3 CH_fan_81 4 4 0.000000000995182
Fragaria vesca Fvb2 3 CH_fve_19 6 6 1.47548e-17
Lotus japonicus chr1 3 CH_lja_170 3 4 0.000006748
Lactuca sativa Lsat_1_v8_lg_5 3 CH_lsa_206 3 3 0.000000332904
Medicago truncatula chr7 3 CH_mtr_373 3 4 0.00000222796
Medicago truncatula chr1 3 CH_mtr_374 3 4 0.00000222796
Nelumbo nucifera chr3 3 CH_nnu_170 3 5 0.0000337037
Oryza sativa ssp. japonica chr02 3 CH_osa_72 5 10 0.0000000000908634
Papaver somniferum NC_039358.1 3 CH_pso_189 4 6 0.00000000455517
Salix brachista GWHAAZH00000016 3 CH_sbr_99 4 7 0.0000000086653
Sequoiadendron giganteum chr2 3 CH_sgi_838 3 10 0.00000853887
Trochodendron aralioides group1 3 CH_tar_184 3 4 0.00000181637
Vaccinium macrocarpon chr9_Vaccinium_macrocarpon_Stevens_v1 3 CH_vma_140 3 3 0.00000155434
Vitis vinifera chr7 3 CH_vvi_169 3 3 0.000000486007
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.16 4 CH_arhy_105 6 10 0.000000000000033606
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.06 4 CH_arhy_153 5 7 0.0000000000102097
Amborella trichopoda AmTr_v1.0_scaffold00067 4 CH_atr_150 3 6 0.00000662348
Cannabis sativa NC_044373.1 4 CH_cansat_61 4 4 0.0000000000594632
Cicer arietinum L. Ca_LG3_v3 4 CH_car_48 3 3 0.000000763278
Daucus carota DCARv2_Chr5 4 CH_dca_178 3 5 0.00000512351
Erigeron canadensis Conyza_canadensis_scaffold:9 4 CH_eca_146 3 4 0.00000042281
Fragaria x ananassa Fvb2-4 4 CH_fan_132 4 8 0.0000000695963
Fragaria x ananassa Fvb2-3 4 CH_fan_81 4 4 0.000000000995182
Fragaria vesca Fvb2 4 CH_fve_19 6 6 1.47548e-17
Lotus japonicus chr1 4 CH_lja_170 3 4 0.000006748
Lactuca sativa Lsat_1_v8_lg_5 4 CH_lsa_206 3 3 0.000000332904
Medicago truncatula chr7 4 CH_mtr_373 3 4 0.00000222796
Medicago truncatula chr1 4 CH_mtr_374 3 4 0.00000222796
Nelumbo nucifera chr3 4 CH_nnu_170 3 5 0.0000337037
Oryza sativa ssp. japonica chr02 4 CH_osa_72 5 10 0.0000000000908634
Papaver somniferum NC_039358.1 4 CH_pso_189 4 6 0.00000000455517
Salix brachista GWHAAZH00000016 4 CH_sbr_99 4 7 0.0000000086653
Sequoiadendron giganteum chr2 4 CH_sgi_838 3 10 0.00000853887
Trochodendron aralioides group1 4 CH_tar_184 3 4 0.00000181637
Vaccinium macrocarpon chr9_Vaccinium_macrocarpon_Stevens_v1 4 CH_vma_140 3 3 0.00000155434
Vitis vinifera chr7 4 CH_vvi_169 3 3 0.000000486007

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001