Functional clusters

Information

  • Type Gene Ontology
  • Description thylakoid

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Amaranthus hybridus AmaHy_arrow1_Scaffold_10 3 CH_amhyb_2 30 56 9.42885e-32
Brassica oleracea Boleracea_scaffold_37 3 CH_bol_80 12 37 0.00000000791643
Brassica rapa Brapa_scaffold_179 3 CH_bra_94 10 26 0.00000069566
Carpinus fangiana scaffold9 3 CH_cfa_76 8 9 0.00000000102572
Cardamine hirsuta ChrC 3 CH_chi_7 29 70 3.32115e-28
Cucumis sativus L. scaffold18_1 3 CH_csa_177 5 5 0.00007263
Helianthus annuus HanXRQChr10 3 CH_han_376 8 16 0.00000656166
Helianthus annuus HanXRQChr13 3 CH_han_658 10 46 0.000421634
Lotus japonicus Contig00489 3 CH_lja_156 8 15 0.00000348663
Lonicera japonica GWHAAZE00000002 3 CH_lonja_20 30 70 3.14271e-31
Olea europaea chr11 3 CH_oeu_88 8 16 0.00000085304
Solanum lycopersicum SL4.0ch01 3 CH_sly_290 10 30 0.0000151773
Solanum lycopersicum SL4.0ch12 3 CH_sly_68 10 10 0.000000000000748738
Selenicereus undatus Scaffold_33676 3 CH_sun_55 9 18 0.00000159578
Vaccinium macrocarpon scaffold00362_Vaccinium_macrocarpon_Stevens_v1 3 CH_vma_12 18 34 1.39177e-17
Zea mays scaf_33 3 CH_zma_40 13 25 0.0000000000743255
Zea mays scaf_34 3 CH_zma_7 21 31 4.51798e-23
Amaranthus hybridus AmaHy_arrow1_Scaffold_10 4 CH_amhyb_2 30 56 9.42885e-32
Brassica oleracea Boleracea_scaffold_37 4 CH_bol_80 12 37 0.00000000791643
Brassica rapa Brapa_scaffold_179 4 CH_bra_94 10 26 0.00000069566
Carpinus fangiana scaffold9 4 CH_cfa_76 8 9 0.00000000102572
Cardamine hirsuta ChrC 4 CH_chi_7 29 70 3.32115e-28
Cucumis sativus L. scaffold18_1 4 CH_csa_177 5 5 0.00007263
Helianthus annuus HanXRQChr10 4 CH_han_376 8 16 0.00000656166
Helianthus annuus HanXRQChr13 4 CH_han_658 10 46 0.000421634
Lotus japonicus Contig00489 4 CH_lja_156 8 15 0.00000348663
Lonicera japonica GWHAAZE00000002 4 CH_lonja_20 30 70 3.14271e-31
Olea europaea chr11 4 CH_oeu_88 8 16 0.00000085304
Solanum lycopersicum SL4.0ch01 4 CH_sly_290 10 30 0.0000151773
Solanum lycopersicum SL4.0ch12 4 CH_sly_68 10 10 0.000000000000748738
Selenicereus undatus Scaffold_33676 4 CH_sun_55 9 18 0.00000159578
Vaccinium macrocarpon scaffold00362_Vaccinium_macrocarpon_Stevens_v1 4 CH_vma_12 18 34 1.39177e-17
Zea mays scaf_33 4 CH_zma_40 13 25 0.0000000000743255
Zea mays scaf_34 4 CH_zma_7 21 31 4.51798e-23

Available child term results

Ontology identifier Description Number of clusters
GO:0009512 cytochrome b6f complex 6
GO:0009515 granal stacked thylakoid 2
GO:0009517 PSII associated light-harvesting complex II 2
GO:0009521 photosystem 8
GO:0009522 photosystem I 8
GO:0009523 photosystem II 14
GO:0009533 chloroplast stromal thylakoid 2
GO:0009534 chloroplast thylakoid 6
GO:0009535 chloroplast thylakoid membrane 46
GO:0009538 photosystem I reaction center 4
GO:0009539 photosystem II reaction center 16
GO:0009543 chloroplast thylakoid lumen 2
GO:0009654 photosystem II oxygen evolving complex 8
GO:0009782 photosystem I antenna complex 2
GO:0009783 photosystem II antenna complex 6
GO:0030093 chloroplast photosystem I 2
GO:0030095 chloroplast photosystem II 4
GO:0031976 plastid thylakoid 2
GO:0031977 thylakoid lumen 4
GO:0034357 photosynthetic membrane 26
GO:0035451 extrinsic component of stromal side of plastid thylakoid membrane 2
GO:0042651 thylakoid membrane 2

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001