Functional clusters
Information
- Type Gene Ontology
- Description nuclear pore
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Acer truncatum | chr12 | 3 | CH_acertr_472 | 4 | 25 | 0.000534468 |
| Camellia sinensis var. sinensis | Chr2 | 3 | CH_camsi_47 | 8 | 14 | 7.68464e-16 |
| Fragaria vesca | Fvb6 | 3 | CH_fve_224 | 3 | 3 | 0.0000233999 |
| Lonicera japonica | GWHAAZE00000005 | 3 | CH_lonja_521 | 3 | 5 | 0.000417356 |
| Lactuca sativa | Lsat_1_v8_lg_1 | 3 | CH_lsa_468 | 3 | 5 | 0.000561431 |
| Malus domestica | Chr06 | 3 | CH_mdo_128 | 5 | 8 | 0.00000000225233 |
| Olea europaea | scaffold948 | 3 | CH_oeu_150 | 3 | 3 | 0.0000455616 |
| Prunus persica | Pp05 | 3 | CH_ppe_357 | 3 | 5 | 0.000168737 |
| Quercus lobata | CM012294 | 3 | CH_qlo_688 | 3 | 3 | 0.0000365415 |
| Rosa chinensis | RcHm_v2.0_Chr2 | 3 | CH_rch_230 | 4 | 4 | 0.0000000125537 |
| Sequoiadendron giganteum | chr6 | 3 | CH_sgi_851 | 4 | 11 | 0.0000104076 |
| Sequoiadendron giganteum | chr8 | 3 | CH_sgi_914 | 3 | 3 | 0.0000351712 |
| Solanum tuberosum | ST4.03ch02 | 3 | CH_stu_209 | 4 | 6 | 0.000000217523 |
| Trifolium pratense | Tp57577_TGAC_v2_LG1 | 3 | CH_tpr_171 | 3 | 3 | 0.0000223482 |
| Vanilla planifolia | CM028156.1 | 3 | CH_vpl_176 | 4 | 13 | 0.000044923 |
| Vanilla planifolia | CM028153.1 | 3 | CH_vpl_292 | 4 | 21 | 0.000373176 |
| Acer truncatum | chr12 | 4 | CH_acertr_472 | 4 | 25 | 0.000534468 |
| Camellia sinensis var. sinensis | Chr2 | 4 | CH_camsi_47 | 8 | 14 | 7.68464e-16 |
| Fragaria vesca | Fvb6 | 4 | CH_fve_224 | 3 | 3 | 0.0000233999 |
| Lonicera japonica | GWHAAZE00000005 | 4 | CH_lonja_521 | 3 | 5 | 0.000417356 |
| Lactuca sativa | Lsat_1_v8_lg_1 | 4 | CH_lsa_468 | 3 | 5 | 0.000561431 |
| Malus domestica | Chr06 | 4 | CH_mdo_128 | 5 | 8 | 0.00000000225233 |
| Olea europaea | scaffold948 | 4 | CH_oeu_150 | 3 | 3 | 0.0000455616 |
| Prunus persica | Pp05 | 4 | CH_ppe_357 | 3 | 5 | 0.000168737 |
| Quercus lobata | CM012294 | 4 | CH_qlo_688 | 3 | 3 | 0.0000365415 |
| Rosa chinensis | RcHm_v2.0_Chr2 | 4 | CH_rch_230 | 4 | 4 | 0.0000000125537 |
| Sequoiadendron giganteum | chr6 | 4 | CH_sgi_851 | 4 | 11 | 0.0000104076 |
| Sequoiadendron giganteum | chr8 | 4 | CH_sgi_914 | 3 | 3 | 0.0000351712 |
| Solanum tuberosum | ST4.03ch02 | 4 | CH_stu_209 | 4 | 6 | 0.000000217523 |
| Trifolium pratense | Tp57577_TGAC_v2_LG1 | 4 | CH_tpr_171 | 3 | 3 | 0.0000223482 |
| Vanilla planifolia | CM028156.1 | 4 | CH_vpl_176 | 4 | 13 | 0.000044923 |
| Vanilla planifolia | CM028153.1 | 4 | CH_vpl_292 | 4 | 21 | 0.000373176 |
Available child term results
| Ontology identifier | Description | Number of clusters |
|---|---|---|
| GO:0031080 | nuclear pore outer ring | 2 |
| GO:0044611 | nuclear pore inner ring | 4 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |