Functional clusters

Information

  • Type Gene Ontology
  • Description nucleosome

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Arabidopsis lyrata scaffold_7 3 CH_aly_85 5 8 0.0000000513466
Amaranthus hybridus AmaHy_arrow1_Scaffold_4 3 CH_amhyb_120 3 3 0.000122016
Amaranthus hybridus AmaHy_arrow1_Scaffold_15 3 CH_amhyb_35 5 7 0.00000000670996
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.13 3 CH_arhy_368 4 6 0.00000281019
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.03 3 CH_arhy_514 3 3 0.000147537
Amborella trichopoda AmTr_v1.0_scaffold00012 3 CH_atr_174 4 17 0.0000314365
Brassica carinata ChrB08 3 CH_bca_35 7 8 0.00000000000001941
Beta vulgaris Chr7_EL10_PGA_scaffold5 3 CH_bvu_57 5 6 0.00000000289464
Capsicum annuum PGAv.1.6.scaffold1432 3 CH_can_117 6 17 0.00000000554162
Citrullus lanatus CG_Chr01 3 CH_cla_41 4 4 0.0000000857144
Carica papaya supercontig_190 3 CH_cpa_121 4 10 0.0000147437
Chenopodium quinoa C_Quinoa_Scaffold_2716 3 CH_cqu_198 5 11 0.000000948594
Chenopodium quinoa C_Quinoa_Scaffold_3876 3 CH_cqu_201 4 4 0.000000973251
Chenopodium quinoa C_Quinoa_Scaffold_2493 3 CH_cqu_217 5 12 0.00000162327
Chlamydomonas reinhardtii chromosome_13 3 CH_cre_37 4 4 0.0000134613
Cucumis sativus L. chr1 3 CH_csa_246 4 19 0.000439166
Erigeron canadensis Conyza_canadensis_scaffold:8 3 CH_eca_166 4 6 0.00000197868
Erigeron canadensis Conyza_canadensis_scaffold:2 3 CH_eca_94 5 9 0.0000000208395
Gossypium hirsutum A01 3 CH_ghi_328 4 5 0.000005324
Gossypium hirsutum D09 3 CH_ghi_417 4 8 0.0000741921
Gossypium hirsutum A09 3 CH_ghi_447 4 9 0.00013334
Glycine max Gm11 3 CH_gma_238 4 6 0.00000716508
Gossypium raimondii Chr06 3 CH_gra_196 4 8 0.0000312584
Gossypium raimondii Chr02 3 CH_gra_287 3 3 0.000246411
Helianthus annuus HanXRQChr05 3 CH_han_333 4 4 0.00000152061
Helianthus annuus HanXRQChr04 3 CH_han_478 4 7 0.0000529274
Helianthus annuus HanXRQChr08 3 CH_han_91 10 48 0.00000000000113528
Hydrangea macrophylla Hma1.2p1_0728F.1 3 CH_hma_17 6 6 0.00000000000105134
Lupinus albus Lalb_Chr08 3 CH_lal_14 9 9 1.89345e-20
Lotus japonicus chr6 3 CH_lja_189 4 7 0.0000275234
Lotus japonicus chr3 3 CH_lja_300 3 3 0.000350993
Lotus japonicus chr4 3 CH_lja_301 3 3 0.000350993
Lonicera japonica GWHAAZE00000002 3 CH_lonja_296 4 6 0.00000241002
Lactuca sativa Lsat_1_v8_lg_1 3 CH_lsa_133 5 5 0.0000000045837
Lactuca sativa Lsat_1_v8_lg_6 3 CH_lsa_160 5 6 0.0000000274438
Lactuca sativa Lsat_1_v8_lg_8 3 CH_lsa_210 6 20 0.000000434157
Lactuca sativa Lsat_1_v8_lg_6 3 CH_lsa_473 3 3 0.000700886
Magnolia biondii Chr05 3 CH_mbi_323 5 20 0.00000612965
Magnolia biondii Chr14 3 CH_mbi_443 4 11 0.0000861728
Manihot esculenta Chromosome04 3 CH_mes_436 3 4 0.000930814
Medicago truncatula chr2 3 CH_mtr_248 6 15 0.0000000248254
Medicago truncatula chr8 3 CH_mtr_443 4 6 0.0000166694
Medicago truncatula chr7 3 CH_mtr_704 3 3 0.00051696
Medicago truncatula chr4 3 CH_mtr_74 8 12 0.0000000000000107733
Oryza sativa ssp. japonica chr06 3 CH_osa_208 4 6 0.00000300988
Petunia axillaris Peaxi162Scf00058 3 CH_pax_138 4 6 0.00000494235
Petunia axillaris Peaxi162Scf00114 3 CH_pax_233 3 3 0.000184173
Prasinoderma coloniale Chr9 3 CH_pco_8 3 5 0.000424383
Prunus persica Pp06 3 CH_ppe_400 4 16 0.000275727
Pisum sativum chr6LG2 3 CH_psa_148 4 4 0.00000315711
Pisum sativum chr5LG3 3 CH_psa_29 7 7 0.0000000000000787146
Pisum sativum chr2LG1 3 CH_psa_345 5 25 0.000470641
Pisum sativum chr7LG7 3 CH_psa_49 7 12 0.0000000000615552
Papaver somniferum NC_039358.1 3 CH_pso_295 5 9 0.000000597538
Populus trichocarpa Chr08 3 CH_ptr_289 4 8 0.0000348454
Populus trichocarpa Chr10 3 CH_ptr_330 4 9 0.0000626257
Phaseolus vulgaris scaffold_15 3 CH_pvu_173 4 6 0.00000481846
Phaseolus vulgaris Chr11 3 CH_pvu_86 5 6 0.00000000340385
Quercus lobata 7 3 CH_qlo_475 5 13 0.000000340153
Quercus lobata 1 3 CH_qlo_557 4 6 0.0000028122
Rhododendron simsii chr07 3 CH_rsi_473 3 4 0.000431675
Striga asiatica scaffold75 3 CH_sas_88 3 3 0.000268452
Salix brachista GWHAAZH00000008 3 CH_sbr_339 3 4 0.000557454
Simmondsia chinensis GWHAASQ00000006 3 CH_sci_192 4 14 0.000248136
Sequoiadendron giganteum chr5 3 CH_sgi_1067 5 26 0.000117722
Sequoiadendron giganteum chr6 3 CH_sgi_121 9 9 3.17754e-20
Sequoiadendron giganteum chr6 3 CH_sgi_447 5 5 0.00000000185666
Sequoiadendron giganteum chr9 3 CH_sgi_796 4 5 0.00000442384
Solanum lycopersicum SL4.0ch05 3 CH_sly_16 11 12 1.07324e-23
Solanum lycopersicum SL4.0ch01 3 CH_sly_261 6 30 0.00000589019
Solanum pennellii Spenn-ch01 3 CH_spe_169 6 30 0.000000980778
Solanum pennellii Spenn-ch06 3 CH_spe_217 4 6 0.00000799493
Solanum pennellii Spenn-ch05 3 CH_spe_45 6 6 0.00000000000171352
Solanum tuberosum ST4.03ch01 3 CH_stu_484 5 31 0.000166742
Trochodendron aralioides group7 3 CH_tar_214 5 15 0.0000073548
Trochodendron aralioides group18 3 CH_tar_420 3 3 0.000461304
Trochodendron aralioides group2 3 CH_tar_421 3 3 0.000461304
Trifolium pratense Tp57577_TGAC_v2_LG7 3 CH_tpr_138 4 5 0.00000412674
Vaccinium macrocarpon chr9_Vaccinium_macrocarpon_Stevens_v1 3 CH_vma_260 3 3 0.00010927
Vitis vinifera chr7 3 CH_vvi_177 4 5 0.000000895073
Vitis vinifera chr6 3 CH_vvi_178 4 5 0.000000895073
Arabidopsis lyrata scaffold_7 4 CH_aly_85 5 8 0.0000000513466
Amaranthus hybridus AmaHy_arrow1_Scaffold_4 4 CH_amhyb_120 3 3 0.000122016
Amaranthus hybridus AmaHy_arrow1_Scaffold_15 4 CH_amhyb_35 5 7 0.00000000670996
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.13 4 CH_arhy_368 4 6 0.00000281019
Arachis hypogaea arahy.Tifrunner.gnm1.Arahy.03 4 CH_arhy_514 3 3 0.000147537
Amborella trichopoda AmTr_v1.0_scaffold00012 4 CH_atr_174 4 17 0.0000314365
Brassica carinata ChrB08 4 CH_bca_35 7 8 0.00000000000001941
Beta vulgaris Chr7_EL10_PGA_scaffold5 4 CH_bvu_57 5 6 0.00000000289464
Capsicum annuum PGAv.1.6.scaffold1432 4 CH_can_117 6 17 0.00000000554162
Citrullus lanatus CG_Chr01 4 CH_cla_41 4 4 0.0000000857144
Carica papaya supercontig_190 4 CH_cpa_121 4 10 0.0000147437
Chenopodium quinoa C_Quinoa_Scaffold_2716 4 CH_cqu_198 5 11 0.000000948594
Chenopodium quinoa C_Quinoa_Scaffold_3876 4 CH_cqu_201 4 4 0.000000973251
Chenopodium quinoa C_Quinoa_Scaffold_2493 4 CH_cqu_217 5 12 0.00000162327
Chlamydomonas reinhardtii chromosome_13 4 CH_cre_37 4 4 0.0000134613
Cucumis sativus L. chr1 4 CH_csa_246 4 19 0.000439166
Erigeron canadensis Conyza_canadensis_scaffold:8 4 CH_eca_166 4 6 0.00000197868
Erigeron canadensis Conyza_canadensis_scaffold:2 4 CH_eca_94 5 9 0.0000000208395
Gossypium hirsutum A01 4 CH_ghi_328 4 5 0.000005324
Gossypium hirsutum D09 4 CH_ghi_417 4 8 0.0000741921
Gossypium hirsutum A09 4 CH_ghi_447 4 9 0.00013334
Glycine max Gm11 4 CH_gma_238 4 6 0.00000716508
Gossypium raimondii Chr06 4 CH_gra_196 4 8 0.0000312584
Gossypium raimondii Chr02 4 CH_gra_287 3 3 0.000246411
Helianthus annuus HanXRQChr05 4 CH_han_333 4 4 0.00000152061
Helianthus annuus HanXRQChr04 4 CH_han_478 4 7 0.0000529274
Helianthus annuus HanXRQChr08 4 CH_han_91 10 48 0.00000000000113528
Hydrangea macrophylla Hma1.2p1_0728F.1 4 CH_hma_17 6 6 0.00000000000105134
Lupinus albus Lalb_Chr08 4 CH_lal_14 9 9 1.89345e-20
Lotus japonicus chr6 4 CH_lja_189 4 7 0.0000275234
Lotus japonicus chr3 4 CH_lja_300 3 3 0.000350993
Lotus japonicus chr4 4 CH_lja_301 3 3 0.000350993
Lonicera japonica GWHAAZE00000002 4 CH_lonja_296 4 6 0.00000241002
Lactuca sativa Lsat_1_v8_lg_1 4 CH_lsa_133 5 5 0.0000000045837
Lactuca sativa Lsat_1_v8_lg_6 4 CH_lsa_160 5 6 0.0000000274438
Lactuca sativa Lsat_1_v8_lg_8 4 CH_lsa_210 6 20 0.000000434157
Lactuca sativa Lsat_1_v8_lg_6 4 CH_lsa_473 3 3 0.000700886
Magnolia biondii Chr05 4 CH_mbi_323 5 20 0.00000612965
Magnolia biondii Chr14 4 CH_mbi_443 4 11 0.0000861728
Manihot esculenta Chromosome04 4 CH_mes_436 3 4 0.000930814
Medicago truncatula chr2 4 CH_mtr_248 6 15 0.0000000248254
Medicago truncatula chr8 4 CH_mtr_443 4 6 0.0000166694
Medicago truncatula chr7 4 CH_mtr_704 3 3 0.00051696
Medicago truncatula chr4 4 CH_mtr_74 8 12 0.0000000000000107733
Oryza sativa ssp. japonica chr06 4 CH_osa_208 4 6 0.00000300988
Petunia axillaris Peaxi162Scf00058 4 CH_pax_138 4 6 0.00000494235
Petunia axillaris Peaxi162Scf00114 4 CH_pax_233 3 3 0.000184173
Prasinoderma coloniale Chr9 4 CH_pco_8 3 5 0.000424383
Prunus persica Pp06 4 CH_ppe_400 4 16 0.000275727
Pisum sativum chr6LG2 4 CH_psa_148 4 4 0.00000315711
Pisum sativum chr5LG3 4 CH_psa_29 7 7 0.0000000000000787146
Pisum sativum chr2LG1 4 CH_psa_345 5 25 0.000470641
Pisum sativum chr7LG7 4 CH_psa_49 7 12 0.0000000000615552
Papaver somniferum NC_039358.1 4 CH_pso_295 5 9 0.000000597538
Populus trichocarpa Chr08 4 CH_ptr_289 4 8 0.0000348454
Populus trichocarpa Chr10 4 CH_ptr_330 4 9 0.0000626257
Phaseolus vulgaris scaffold_15 4 CH_pvu_173 4 6 0.00000481846
Phaseolus vulgaris Chr11 4 CH_pvu_86 5 6 0.00000000340385
Quercus lobata 7 4 CH_qlo_475 5 13 0.000000340153
Quercus lobata 1 4 CH_qlo_557 4 6 0.0000028122
Rhododendron simsii chr07 4 CH_rsi_473 3 4 0.000431675
Striga asiatica scaffold75 4 CH_sas_88 3 3 0.000268452
Salix brachista GWHAAZH00000008 4 CH_sbr_339 3 4 0.000557454
Simmondsia chinensis GWHAASQ00000006 4 CH_sci_192 4 14 0.000248136
Sequoiadendron giganteum chr5 4 CH_sgi_1067 5 26 0.000117722
Sequoiadendron giganteum chr6 4 CH_sgi_121 9 9 3.17754e-20
Sequoiadendron giganteum chr6 4 CH_sgi_447 5 5 0.00000000185666
Sequoiadendron giganteum chr9 4 CH_sgi_796 4 5 0.00000442384
Solanum lycopersicum SL4.0ch05 4 CH_sly_16 11 12 1.07324e-23
Solanum lycopersicum SL4.0ch01 4 CH_sly_261 6 30 0.00000589019
Solanum pennellii Spenn-ch01 4 CH_spe_169 6 30 0.000000980778
Solanum pennellii Spenn-ch06 4 CH_spe_217 4 6 0.00000799493
Solanum pennellii Spenn-ch05 4 CH_spe_45 6 6 0.00000000000171352
Solanum tuberosum ST4.03ch01 4 CH_stu_484 5 31 0.000166742
Trochodendron aralioides group7 4 CH_tar_214 5 15 0.0000073548
Trochodendron aralioides group18 4 CH_tar_420 3 3 0.000461304
Trochodendron aralioides group2 4 CH_tar_421 3 3 0.000461304
Trifolium pratense Tp57577_TGAC_v2_LG7 4 CH_tpr_138 4 5 0.00000412674
Vaccinium macrocarpon chr9_Vaccinium_macrocarpon_Stevens_v1 4 CH_vma_260 3 3 0.00010927
Vitis vinifera chr7 4 CH_vvi_177 4 5 0.000000895073
Vitis vinifera chr6 4 CH_vvi_178 4 5 0.000000895073

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001