Functional clusters

Information

  • Type Gene Ontology
  • Description chloroplast

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Arabidopsis thaliana ChrC 3 CH_ath_10 30 30 1.74255e-29
Brassica carinata ChrC05 3 CH_bca_535 8 10 0.0000594039
Camellia sinensis var. sinensis Chr7 3 CH_camsi_419 12 21 0.00000940055
Cannabis sativa NC_044374.1 3 CH_cansat_248 9 13 0.000131668
Eucalyptus grandis Chr11 3 CH_egr_416 16 29 0.0000000296156
Eutrema salsugineum scaffold_16 3 CH_esa_51 13 15 0.00000000348134
Helianthus annuus HanXRQChr11 3 CH_han_11 30 36 1.89483e-27
Helianthus annuus HanXRQChr12 3 CH_han_262 15 28 0.000000161768
Helianthus annuus HanXRQChr02 3 CH_han_479 9 12 0.0000534441
Helianthus annuus HanXRQChr01 3 CH_han_48 22 30 5.53943e-17
Helianthus annuus HanXRQChr07 3 CH_han_695 7 8 0.00068793
Helianthus annuus HanXRQCP 3 CH_han_7 30 35 3.33766e-28
Magnolia biondii Chr02 3 CH_mbi_567 13 40 0.000370444
Medicago truncatula chr4 3 CH_mtr_40 25 41 1.48298e-19
Olea europaea chr1 3 CH_oeu_56 16 33 0.000000043115
Quercus lobata 8 3 CH_qlo_346 24 70 0.00000000766268
Salvia bowleyana GWHASIU00000001 3 CH_sbo_356 7 8 0.000115539
Schrenkiella parvula ch6-6 3 CH_spa_133 11 18 0.000116693
Vanilla planifolia CM028162.1 3 CH_vpl_372 20 70 0.000888788
Arabidopsis thaliana ChrC 4 CH_ath_10 30 30 1.74255e-29
Brassica carinata ChrC05 4 CH_bca_535 8 10 0.0000594039
Camellia sinensis var. sinensis Chr7 4 CH_camsi_419 12 21 0.00000940055
Cannabis sativa NC_044374.1 4 CH_cansat_248 9 13 0.000131668
Eucalyptus grandis Chr11 4 CH_egr_416 16 29 0.0000000296156
Eutrema salsugineum scaffold_16 4 CH_esa_51 13 15 0.00000000348134
Helianthus annuus HanXRQChr11 4 CH_han_11 30 36 1.89483e-27
Helianthus annuus HanXRQChr12 4 CH_han_262 15 28 0.000000161768
Helianthus annuus HanXRQChr02 4 CH_han_479 9 12 0.0000534441
Helianthus annuus HanXRQChr01 4 CH_han_48 22 30 5.53943e-17
Helianthus annuus HanXRQChr07 4 CH_han_695 7 8 0.00068793
Helianthus annuus HanXRQCP 4 CH_han_7 30 35 3.33766e-28
Magnolia biondii Chr02 4 CH_mbi_567 13 40 0.000370444
Medicago truncatula chr4 4 CH_mtr_40 25 41 1.48298e-19
Olea europaea chr1 4 CH_oeu_56 16 33 0.000000043115
Quercus lobata 8 4 CH_qlo_346 24 70 0.00000000766268
Salvia bowleyana GWHASIU00000001 4 CH_sbo_356 7 8 0.000115539
Schrenkiella parvula ch6-6 4 CH_spa_133 11 18 0.000116693
Vanilla planifolia CM028162.1 4 CH_vpl_372 20 70 0.000888788

Available child term results

Ontology identifier Description Number of clusters
GO:0009515 granal stacked thylakoid 2
GO:0009517 PSII associated light-harvesting complex II 2
GO:0009533 chloroplast stromal thylakoid 2
GO:0009534 chloroplast thylakoid 6
GO:0009535 chloroplast thylakoid membrane 46
GO:0009543 chloroplast thylakoid lumen 2
GO:0009569 chloroplast starch grain 2
GO:0009570 chloroplast stroma 8
GO:0009706 chloroplast inner membrane 10
GO:0009707 chloroplast outer membrane 4
GO:0009941 chloroplast envelope 10
GO:0010006 Toc complex 2
GO:0010287 plastoglobule 12
GO:0010368 chloroplast isoamylase complex 2
GO:0030093 chloroplast photosystem I 2
GO:0030095 chloroplast photosystem II 4
GO:0031357 integral component of chloroplast inner membrane 12
GO:0031359 integral component of chloroplast outer membrane 2
GO:0031897 Tic complex 10
GO:0031972 chloroplast intermembrane space 4
GO:0042644 chloroplast nucleoid 4
GO:0061927 TOC-TIC supercomplex I 2

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001