Functional clusters

Information

  • Type Gene Ontology
  • Description chloroplast thylakoid membrane

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Camellia sinensis var. sinensis Chr11 3 CH_camsi_568 5 8 0.000118419
Corylus avellana 1 3 CH_cav_281 6 14 0.000112549
Carpinus fangiana Cfa04 3 CH_cfa_205 5 7 0.0000555047
Eucalyptus grandis Chr11 3 CH_egr_310 7 7 0.000000000285248
Fragaria x ananassa Fvb2-4 3 CH_fan_395 5 7 0.000132864
Fragaria vesca Fvb2 3 CH_fve_96 7 9 0.00000000494801
Gossypium hirsutum D07 3 CH_ghi_358 5 5 0.0000104766
Gossypium hirsutum A07 3 CH_ghi_629 5 8 0.000571181
Gossypium hirsutum A07 3 CH_ghi_707 4 4 0.000982086
Gossypium hirsutum D07 3 CH_ghi_708 4 4 0.000982086
Gossypium raimondii Chr01 3 CH_gra_175 5 5 0.00000605552
Malus domestica Chr05 3 CH_mdo_99 10 21 0.0000000000908118
Manihot esculenta Chromosome13 3 CH_mes_396 4 4 0.000609263
Prunus persica Pp08 3 CH_ppe_126 8 10 0.000000000272045
Papaver somniferum NC_029434.1 3 CH_pso_3 30 52 5.64322e-45
Quercus lobata 9 3 CH_qlo_413 7 11 0.0000000596968
Rosa chinensis RcHm_v2.0_Chr6 3 CH_rch_111 9 12 0.000000000000344649
Rhododendron simsii chr01 3 CH_rsi_441 4 4 0.00031628
Sequoiadendron giganteum chr5 3 CH_sgi_1173 4 4 0.000191992
Solanum pennellii Spenn-ch02 3 CH_spe_409 6 20 0.000420614
Solanum tuberosum ST4.03ch02 3 CH_stu_417 7 23 0.000098545
Vaccinium macrocarpon chr9_Vaccinium_macrocarpon_Stevens_v1 3 CH_vma_359 4 4 0.000620969
Vaccinium macrocarpon chr7_Vaccinium_macrocarpon_Stevens_v1 3 CH_vma_360 4 4 0.000620969
Camellia sinensis var. sinensis Chr11 4 CH_camsi_568 5 8 0.000118419
Corylus avellana 1 4 CH_cav_281 6 14 0.000112549
Carpinus fangiana Cfa04 4 CH_cfa_205 5 7 0.0000555047
Eucalyptus grandis Chr11 4 CH_egr_310 7 7 0.000000000285248
Fragaria x ananassa Fvb2-4 4 CH_fan_395 5 7 0.000132864
Fragaria vesca Fvb2 4 CH_fve_96 7 9 0.00000000494801
Gossypium hirsutum D07 4 CH_ghi_358 5 5 0.0000104766
Gossypium hirsutum A07 4 CH_ghi_629 5 8 0.000571181
Gossypium hirsutum A07 4 CH_ghi_707 4 4 0.000982086
Gossypium hirsutum D07 4 CH_ghi_708 4 4 0.000982086
Gossypium raimondii Chr01 4 CH_gra_175 5 5 0.00000605552
Malus domestica Chr05 4 CH_mdo_99 10 21 0.0000000000908118
Manihot esculenta Chromosome13 4 CH_mes_396 4 4 0.000609263
Prunus persica Pp08 4 CH_ppe_126 8 10 0.000000000272045
Papaver somniferum NC_029434.1 4 CH_pso_3 30 52 5.64322e-45
Quercus lobata 9 4 CH_qlo_413 7 11 0.0000000596968
Rosa chinensis RcHm_v2.0_Chr6 4 CH_rch_111 9 12 0.000000000000344649
Rhododendron simsii chr01 4 CH_rsi_441 4 4 0.00031628
Sequoiadendron giganteum chr5 4 CH_sgi_1173 4 4 0.000191992
Solanum pennellii Spenn-ch02 4 CH_spe_409 6 20 0.000420614
Solanum tuberosum ST4.03ch02 4 CH_stu_417 7 23 0.000098545
Vaccinium macrocarpon chr9_Vaccinium_macrocarpon_Stevens_v1 4 CH_vma_359 4 4 0.000620969
Vaccinium macrocarpon chr7_Vaccinium_macrocarpon_Stevens_v1 4 CH_vma_360 4 4 0.000620969

Available child term results

Ontology identifier Description Number of clusters
GO:0009517 PSII associated light-harvesting complex II 2
GO:0030093 chloroplast photosystem I 2
GO:0030095 chloroplast photosystem II 4

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001