Functional clusters

Information

  • Type Gene Ontology
  • Description endoplasmic reticulum

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Arabidopsis thaliana Chr5 3 CH_ath_104 12 28 0.00000000423288
Arabidopsis thaliana Chr2 3 CH_ath_111 17 75 0.00000000494538
Arabidopsis thaliana Chr2 3 CH_ath_116 17 77 0.00000000788319
Arabidopsis thaliana Chr2 3 CH_ath_216 15 77 0.0000015018
Arabidopsis thaliana Chr2 3 CH_ath_257 14 70 0.00000480242
Carpinus fangiana Cfa06 3 CH_cfa_312 9 32 0.000511656
Eucalyptus grandis Chr10 3 CH_egr_562 13 46 0.00000322381
Eucalyptus grandis Chr11 3 CH_egr_826 5 5 0.00038489
Olea europaea chr16 3 CH_oeu_197 13 78 0.000120503
Prunus persica Pp04 3 CH_ppe_360 6 8 0.00020073
Arabidopsis thaliana Chr5 4 CH_ath_104 12 28 0.00000000423288
Arabidopsis thaliana Chr2 4 CH_ath_111 17 75 0.00000000494538
Arabidopsis thaliana Chr2 4 CH_ath_116 17 77 0.00000000788319
Arabidopsis thaliana Chr2 4 CH_ath_216 15 77 0.0000015018
Arabidopsis thaliana Chr2 4 CH_ath_257 14 70 0.00000480242
Carpinus fangiana Cfa06 4 CH_cfa_312 9 32 0.000511656
Eucalyptus grandis Chr10 4 CH_egr_562 13 46 0.00000322381
Eucalyptus grandis Chr11 4 CH_egr_826 5 5 0.00038489
Olea europaea chr16 4 CH_oeu_197 13 78 0.000120503
Prunus persica Pp04 4 CH_ppe_360 6 8 0.00020073

Available child term results

Ontology identifier Description Number of clusters
GO:0000506 glycosylphosphatidylinositol-N-acetylglucosaminyltransferase (GPI-GnT) complex 10
GO:0005784 Sec61 translocon complex 8
GO:0005785 signal recognition particle receptor complex 12
GO:0005787 signal peptidase complex 18
GO:0005789 endoplasmic reticulum membrane 14
GO:0008250 oligosaccharyltransferase complex 6
GO:0009511 plasmodesmatal endoplasmic reticulum 6
GO:0009923 fatty acid elongase complex 6
GO:0017059 serine C-palmitoyltransferase complex 2
GO:0030176 integral component of endoplasmic reticulum membrane 6
GO:0032541 cortical endoplasmic reticulum 2
GO:0034663 endoplasmic reticulum chaperone complex 2
GO:0034998 oligosaccharyltransferase I complex 2
GO:0042406 extrinsic component of endoplasmic reticulum membrane 2
GO:0042765 GPI-anchor transamidase complex 4
GO:0070939 Dsl1/NZR complex 2
GO:0071458 integral component of cytoplasmic side of endoplasmic reticulum membrane 4
GO:0072546 EMC complex 20
GO:0098827 endoplasmic reticulum subcompartment 2
GO:1990578 perinuclear endoplasmic reticulum membrane 46

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001