Functional clusters
Information
- Type Gene Ontology
- Description chloroplast stroma
Cluster overview
| Species | Chromosome | Experiment | Cluster id | Cluster size | Number of genes | E-value |
|---|---|---|---|---|---|---|
| Chenopodium quinoa | C_Quinoa_Scaffold_1611 | 3 | CH_cqu_347 | 6 | 7 | 0.0000868813 |
| Lotus japonicus | chr1 | 3 | CH_lja_255 | 10 | 34 | 0.000167965 |
| Rosa chinensis | RcHm_v2.0_Chr1 | 3 | CH_rch_655 | 7 | 20 | 0.00026104 |
| Tripterygium wilfordii | NC_052237.1 | 3 | CH_twi_291 | 8 | 21 | 0.000361766 |
| Chenopodium quinoa | C_Quinoa_Scaffold_1611 | 4 | CH_cqu_347 | 6 | 7 | 0.0000868813 |
| Lotus japonicus | chr1 | 4 | CH_lja_255 | 10 | 34 | 0.000167965 |
| Rosa chinensis | RcHm_v2.0_Chr1 | 4 | CH_rch_655 | 7 | 20 | 0.00026104 |
| Tripterygium wilfordii | NC_052237.1 | 4 | CH_twi_291 | 8 | 21 | 0.000361766 |
Available child term results
| Ontology identifier | Description | Number of clusters |
|---|---|---|
| GO:0009533 | chloroplast stromal thylakoid | 2 |
| GO:0010287 | plastoglobule | 12 |
| GO:0042644 | chloroplast nucleoid | 4 |
Functional Clusters Experiments
| Exp id | Data type | Data filter | Min genes cluster | Max genes cluster | Max cluster size | E-value | Tandems removal |
|---|---|---|---|---|---|---|---|
| 1 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 2 | MapMan | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 3 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 4 | GO | All GO data. | 2 | 30 | 80 | 0.001 | |
| 5 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 | |
| 6 | InterPro | No filter applied. | 2 | 30 | 80 | 0.001 |