Functional clusters

Information

  • Type Gene Ontology
  • Description chromosome

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Fragaria x ananassa Fvb7-2 3 CH_fan_335 6 53 0.0000426186
Medicago truncatula chr3 3 CH_mtr_529 3 3 0.000105501
Fragaria x ananassa Fvb7-2 4 CH_fan_335 6 53 0.0000426186
Medicago truncatula chr3 4 CH_mtr_529 3 3 0.000105501

Available child term results

Ontology identifier Description Number of clusters
GO:0000775 chromosome, centromeric region 4
GO:0000776 kinetochore 2
GO:0000781 chromosome, telomeric region 4
GO:0000785 chromatin 4
GO:0000786 nucleosome 162
GO:0000792 heterochromatin 8
GO:0000795 synaptonemal complex 4
GO:0000796 condensin complex 36
GO:0000802 transverse filament 20
GO:0000808 origin recognition complex 8
GO:0000811 GINS complex 8
GO:0000812 Swr1 complex 4
GO:0000818 nuclear MIS12/MIND complex 2
GO:0000940 outer kinetochore 4
GO:0005657 replication fork 2
GO:0005662 DNA replication factor A complex 4
GO:0005664 nuclear origin of replication recognition complex 16
GO:0005712 chiasma 4
GO:0005721 pericentric heterochromatin 16
GO:0008278 cohesin complex 20
GO:0008622 epsilon DNA polymerase complex 38
GO:0009508 plastid chromosome 2
GO:0016514 SWI/SNF complex 8
GO:0030875 rDNA protrusion 2
GO:0030896 checkpoint clamp complex 20
GO:0030915 Smc5-Smc6 complex 28
GO:0031011 Ino80 complex 18
GO:0031213 RSF complex 28
GO:0031262 Ndc80 complex 14
GO:0031390 Ctf18 RFC-like complex 18
GO:0031422 RecQ family helicase-topoisomerase III complex 14
GO:0035060 brahma complex 4
GO:0035101 FACT complex 74
GO:0035861 site of double-strand break 4
GO:0042729 DASH complex 2
GO:0043601 nuclear replisome 2
GO:0043625 delta DNA polymerase complex 10
GO:1990879 CST complex 2

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001